Arachis ipaensis: 107615999
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Entry
107615999 CDS
T04301
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107615999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107615999
Enzymes [BR:
aip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107615999
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107615999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107615999
NCBI-ProteinID:
XP_016173515
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All DBs
Position
B01:7616932..7622815
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AA seq
720 aa
AA seq
DB search
MNPTPRKLALSLSRALSRALTTATAAASQSGSAFPLKTVTTKNFEASLSELRDHVRTSDF
VAIDLEMTGVTSAPWRESFEFDRSDVRYLKVRDSAHKFAVVQFGVCPFRWDSSNHYFVAY
PYNFYVFPRQELEDLAPCYEFLCQTTSMDFLAKYQFDFNACIREGISYLSRAQESEAVRR
LNSRYESEHSNICKLKDVKDIQLISMADILFSERMKNKFSKWRDGLLQEQSREEQIIGTS
KDSKQLFEVIFFKMHPAIRLSGFTSRQLKLIQLVIRKHFQDLSYVCVNSEDSGSQHMVVY
TDSKDELNLLLKEVKDGNRKAEEKKIQNAVGFRHVIDLLSAEKKLIVGHNCFLDIAHVYN
KFIGPLPGTPEEFVTSINKYFPHIVDTKILFNNNHVLQEKMKRSRKSLASAFSLFCPQIA
VGSNSSDLDSPLHVKVNVEVNDLRSSSWNPGAKHEAGYDAFMTGCIFAQICSDLGVDYKH
HESSPQQLALNEKLQKYVNHLYLSWIHGDIIDLNTGDKVAESTPSNNLKRQYPKILFENI
VIIWGFPSQLKANDLRVCISKVFGPASVVSVYHLDATAVFVQFSKTELVYDFLLLKDTLE
RSDGAILVLHPLAKILEGGNTCAADYDTYKEICGSPISEALFAVQAKAVGIKWKTKLVES
HVTVQTEDHESPGAEGSVNSVMKFVKSKPNIIEQLRNAPSHRKVSSFETEDSCCAVEMNA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaacaccaaggaaactcgcactctcactctcacgtgcgctctcacgtgcccta
actactgccaccgccgcagcctcgcaatctggatcggctttcccactcaagacggttacc
accaaaaacttcgaagcgtctctttcggagctccgggaccatgtccgaacctccgatttt
gttgccatcgaccttgagatgaccggcgtaaccagtgcaccctggcgggagtccttcgag
ttcgaccgctccgacgtccggtacctgaaggtcagggactccgcccacaagttcgccgtc
gttcagttcggcgtctgccccttccgttgggactcttccaaccactacttcgtcgcttat
ccgtacaatttctatgtttttccacgtcaggagcttgaggatctggctccatgttatgaa
tttctctgccagactacttcaatggatttcttggctaaataccagtttgatttcaatgca
tgcatacgtgaaggaatatcttatttatctagagcgcaagaaagcgaagcagtaaggaga
ttgaattctagatacgaaagtgagcattcaaacatttgtaaattaaaagacgttaaagac
atacaattgatcagcatggcagacatattgttctctgaacgaatgaaaaacaaattcagt
aaatggcgtgatgggttattacaggagcaaagtcgagaagaacaaattataggaacttca
aaagactcaaaacagctatttgaagtgattttctttaagatgcatcctgctattagactt
agtggatttacatctcggcagctaaaattgattcagttggtcatcagaaaacactttcaa
gatttgtcatatgtatgtgtgaatagcgaagattctggttcacaacatatggttgtatat
acagactcaaaggatgaactaaacttacttctgaaggaggtaaaagatggaaatcgcaag
gcagaagagaagaagattcaaaatgctgtgggatttcgccatgttattgatctcctttct
gcagaaaagaagttgattgttggtcataattgttttctggatattgctcatgtctacaac
aaatttataggtccccttccagggactcctgaagagtttgtcacctctattaacaagtat
tttccgcacattgttgacactaaaatactcttcaacaataatcatgtgctccaagaaaag
atgaaaaggtcaagaaaatcactggcctctgcattttccttgttttgtccacaaattgca
gtaggttccaacagcagtgatcttgattcacccttacatgtgaaagtgaatgttgaagtt
aatgatttgagatcatcgagctggaaccctggagccaagcatgaggccggatatgatgct
tttatgactggttgcatctttgctcaaatatgcagtgatttaggagttgattataaacac
catgaatcttctccacaacaactagccctcaatgagaaactacaaaagtatgttaaccat
ctatatcttagttggatacatggggacattattgatctgaataccggtgataaggttgca
gaatctacaccaagcaataacctcaagaggcaatatccaaagattttgtttgaaaatatt
gttattatttggggttttccttctcagctgaaggcaaatgatctaagagtgtgcatatct
aaagtttttggtccagcttctgtggtttctgtctaccacttggatgcgactgcagtattt
gtgcagtttagtaagacagaactagtttacgacttccttttgttgaaggacaccttagaa
agaagtgatggcgcaatcttggttttgcaccctcttgcaaagattttggaagggggcaat
acatgtgccgctgattatgatacttacaaagaaatctgtggttcacccatttccgaagct
ttgtttgccgtgcaggcaaaggcggttggcataaagtggaagaccaaattggtagaaagc
catgtcacagtgcaaactgaagaccacgaaagtccaggcgcagaaggttctgtaaattcg
gttatgaaatttgtaaagtccaaaccaaacataattgagcagttaagaaatgctccatct
cataggaaagtctcatcttttgagaccgaagattcttgctgtgcagtagaaatgaatgct
tga
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