Arachis ipaensis: 107617329
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Entry
107617329 CDS
T04301
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aip
Arachis ipaensis
Pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107617329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107617329
03041 Spliceosome [BR:
aip03041
]
107617329
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107617329
Spliceosome [BR:
aip03041
]
Complex B
Other components
Prp19-related factors
107617329
Complex C
107617329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21
ARM_TT21_C
NRDE-2
UTP6_C
Motif
Other DBs
NCBI-GeneID:
107617329
NCBI-ProteinID:
XP_016174555
LinkDB
All DBs
Position
B09:complement(4813311..4819905)
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AA seq
917 aa
AA seq
DB search
MPSSSSISQDLYPSQDDLLYEEEILRNPFSLKLWWRYLIARSESPFKKRFVIYERALKAL
PGSYKLWHAYLRERLDLVRNLPITHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTHQK
LLTRTRRTFDRALCALPVTQHDRIWEPYLVFVSQRGVPIETSLRVYRRYLKYDPSHIEDF
IEFLVNSCLWQEAAERLASVLNDGTFFSIKGKTRHRLWLELCELLTRHANEVSGLNVDAI
IRGGIRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVVTVRDFGVIFDSYSQFE
ESMLAYKMEEMGMSDEEEEDNGEENGFGDGEEEDVRFKGEDFERKILRGFWLNDKNDIDL
RLARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYEHHKDLANARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNF
KGALDLMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAV
YERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVK
RYGKTKLERARELFENAVETAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDEATKAVPND
EKLSMYEIYIARASEIFGVPKTRQIYELAIQSGLPDKDVKTMCLKFAELEKSLGEIDRAR
AIYGHASQFANPRSDPEFWEKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYL
MQKDQTVNLDEAKDKLKQAGVPEDEMAALERQLAPATNDTATKERKVGFVSAGVESQTDG
GLRVSANHEDIELPEESDSDDEEKVEIAQKDVPSAVFGSLVRGRDEGGMNGEADGTKDQD
NESRLGALERIKRQKTK
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgccttcatcatcgtcaatttctcaggacctgtacccttcccaagacgaccttctgtac
gaggaagagattctccgaaaccctttcagcctcaagctatggtggcgatacctaattgct
cgttccgaatctcccttcaagaaacgtttcgtcatttacgaacgcgctctcaaagccctt
ccaggttcctacaagctctggcacgcttacctccgcgagcgcctcgatctcgttcgaaac
ctcccaatcactcactctcaatacgacacactcaacaacactttcgagcgtgctctcgtc
actatgcacaagatgcctcgaatctggatcatgtacctccaaaccctaacccaccagaag
cttcttacaagaaccaggagaaccttcgatcgagctctttgcgctttgccggtcactcag
catgataggatctgggaaccctatttggttttcgtgagtcagaggggtgtgcccatagag
acttctcttcgggtttatcgtaggtacttgaagtatgatccttcccatattgaggatttt
attgagtttttggtgaattcttgcttgtggcaggaggctgctgaaaggttggcttcggtt
ttgaatgatggcacgtttttctcgattaaggggaagactaggcatagattgtggttggag
ttgtgtgaattgctcactaggcatgctaatgaggtctcggggttaaatgtagatgccata
attaggggcgggattaggaagttcactgatgaggttggcaggttgtggacttcgttggcc
gagtattatattaggaggggtttgcacgagaaggcgagggatgtgttcgaagaagggatg
tcaactgttgtgactgttagggatttcggtgtgattttcgattcgtattcacagtttgag
gagagcatgcttgcttacaagatggaggagatgggaatgagtgacgaggaggaagaagat
aatggtgaagaaaacggttttggggatggggaagaggaggatgttcggtttaaaggggag
gattttgagaggaagatcttacgtgggttttggttgaatgacaagaatgacatagacttg
aggttggcacgttttgattaccttatggaaaggaggccggagttggctaacagtgtgcta
ttgcgccagaatcctcacaatgtggagcagtggcatcggagggtgaagctttttgagggt
aatcctacgaggcagatactgacttataccgaggctgtcaggacaattgatcccatgaag
gcagtgggaaagcctcatactttgtgggttgccttcgccaagctgtatgaacatcataaa
gatcttgccaatgcccgggtcatatttgacaaggcggtacaagtgaattataaaactgtg
gataatctggctagtgtctggtgtgagtgggcagaaatggagttgagacataagaatttt
aaaggagcacttgatcttatgaggcgggctacagcagaaccatcagttgaagtcaaacga
agagtggctgctgatgggaatgaaccagttcagatgaagttgcataaatctttgagattg
tggaccttttacgtcgatttggaggagagtctaggtactttggagtctacccgggctgtt
tatgagcggatattagatttacgaatagccacaccacaaataattattaattatgcctac
tttctggaggaacataaatactttgaagatgcttttaaagtgtatgaaagaggggtgaag
atattcaagtatccacatgtgaaagacatatgggtcacatatctgtctaaatttgtgaag
agatatggaaagacaaaattggagagagcaagagagctgtttgagaatgcagttgaaacg
gctccagctgatcaagtgaagcctctttacctgcaatatgctaagctggaggaggactat
ggactagccaagcgagccatgaaagtgtacgatgaagcaactaaggctgttcctaatgat
gagaagttaagcatgtatgaaatatacattgctcgtgcatctgagatatttggtgtaccc
aaaactaggcagatctatgagctggcaattcaatctggtcttccggacaaagatgtcaaa
actatgtgcctaaagtttgctgagctggagaaaagcttgggagaaatagatcgagcacgt
gcaatatatggacatgcctctcagtttgccaatccacgatcagatccggaattctgggaa
aagtggcatgaatttgaagttcagcatggaaacgaagataccttcagagagatgcttcgc
attaaacgaagtgtctctgcaagctacagccagacacatttcatattgccagagtatctg
atgcaaaaggatcagactgtgaatcttgatgaagccaaagacaagttgaaacaggctggg
gtccctgaggatgaaatggctgctttagaaaggcaactagccccagcaacaaacgataca
gcgaccaaagagagaaaagtagggtttgtgagtgctggagttgaatcacagactgatgga
gggttaagagtcagtgcgaatcacgaggatattgagttaccagaagaaagtgactctgat
gatgaggaaaaggttgaaattgcacaaaaagatgttccttctgctgtttttggcagtttg
gttcgaggtagagacgagggtggaatgaatggagaagcggatggtactaaagatcaagat
aatgagagtcggcttggtgcccttgagagaataaagaggcaaaaaacaaaatga
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