Arachis ipaensis: 107617985
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Entry
107617985 CDS
T04301
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107617985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107617985
03019 Messenger RNA biogenesis [BR:
aip03019
]
107617985
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107617985
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107617985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
107617985
NCBI-ProteinID:
XP_016175370
LinkDB
All DBs
Position
B09:complement(145278542..145284704)
Genome browser
AA seq
972 aa
AA seq
DB search
MYSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQKPPPSILVGRFKAMLKQ
RDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNLKAIINDLTFIAEQQREHARGIADAI
CARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHL
FGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSNMNPLRASESPRPSHGIHVNPKYLRQLE
RSTVDSVGGEKFDIAGKASNTNFGIVANKTNQFVSSRLGISSSPSRIGLDRPLSVADEYA
VDSSSGRMVERESPHNYGVPRVVGREEELGEWQRKQYPGDVRNRFQTPLTYSLSNGHPRQ
SPRALIDAYGSDKSQETSSTKPLILDRLDRNGIDNKVTSWQNTEEEEFDWEDMSPTLVDH
SRNNGFLQSTAFSRDKPVAVAANAILSEQDTRKGWSGGSQLPPVDDSSVIAADAFPHSVY
GRVSMGQVSGFQNQINQSLGSRPPHDAWKVSQSQTMLNIRGRGRTLLMPPIDNNPNNDVN
PYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPIFPPQKHVRSQF
DAINTSNPIMNHGPNKSLFMPEQPGLDIVENRDASKGKIHQLPNQLAGLLPSNLQNLGQT
PQHFFPSRDPSSSQFGHGNSLQGHGPSLSAAMSNPLPITQFPLPVQGIANNSLQLQGGVH
PPLPPGRPPAPSQMIPHPNAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGT
EFNPDILKIRYESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKP
SRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFD
EFYSDEMEEWMYRGAVYLNAPTGATVGMDRSQLGPIIHAKCRSDTNTSPSEDFGLDEGGA
NEEGSQRKRMRS
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgaaaatctgatagtgtccgctgaaaaccctagacccttcgcgtttcagcaa
catctatcttcttcttcgtctactactacttcggccaacgcgaaacccatgagcaatgag
atcgcacagaagcctcccccttccattctcgttggcaggttcaaggctatgctcaagcag
cgcgacgacgagctcagagccaccgccggtcacgtgccgcctccgtctacggaagaaatc
gttcagctgtacgagatgctgctgtcggagctcacgtgcaatctgaaggccattatcaac
gatctcaccttcatcgctgagcagcagagggagcatgccaggggcatcgccgacgctatc
tgcgctcggattctcgaggtgcctgcagagcaaaagcttccttcactctatcttttggac
agtatagtgaagaactttggacaggaatatgttagatactttgcattacgcctgcccgaa
gttttctgtgaggcatacaggcaggttcagcctcatttgcaccctgctatgcgccatctc
tttggcacctggtcaaaagtctttccaccgtctgtcctacgcaagattgaagctgagttg
caactttctcaagtagttaataatagtcaatcgtccaacatgaatcccctcagagcatct
gaatctcctagaccaagtcatggcatacatgtaaatccaaagtacctgcggcagttggag
cgctcaactgtggatagtgttggtggtgaaaagtttgacatagcaggaaaggctagtaat
acaaattttggcattgtagctaataagacgaatcaatttgtatctagcagacttggaata
tcctcttctccttcaagaattggtctagataggcctttgtcagtagcagatgagtatgca
gttgacagttcttctggaaggatggttgagagagagtctcctcataattatggagtacca
agagtagtaggtagagaggaagaattgggtgaatggcagcgaaagcagtaccctggtgat
gttcgaaatcgatttcaaactcctttgacatacagccttagtaatggacatccgcgtcaa
agtccaagagctttaattgatgcgtatggcagtgacaaaagccaagaaacttcaagcacc
aagcctcttatacttgatcggctagatagaaatggtatcgacaacaaagtgacatcatgg
cagaatactgaagaggaggagtttgattgggaagatatgagtccaacattagtagaccat
agtaggaataatggcttcttgcaatcaactgctttttccagggataagcctgttgcagta
gcagctaatgcaattttgtcagagcaagatacaaggaagggttggtctggtgggtctcag
cttcctccagtagatgattcttctgtcatagcagcagatgcatttccccattcagtttat
ggtcgtgtatccatggggcaggtatctggtttccaaaatcaaataaatcagagtctgggt
tcccgtccacctcatgatgcttggaaggtttctcaatcacaaaccatgcttaatattagg
ggccgaggaagaactcttttgatgcctcctattgataacaatcccaataatgatgtaaac
ccctatgggattcgacctgcagtgtcaaggatggtttctggtattgcctctaacgtagag
cctcgtccaccagttttgcctggatcttttgaaataagaccttctgtaactgtgcatggc
actcgtcctcccaccttaaatccaatatttccaccgcaaaaacatgttagaagtcaattt
gatgcaataaataccagtaatcccattatgaatcatggcccaaataaatctctgttcatg
cctgaacagccagggctggacattgttgaaaacagggatgccagtaaaggaaagatacat
cagttgcctaatcagctggctggattgcttccatccaacctgcaaaaccttggacaaaca
ccacaacattttttcccatctcgggatccatcatcctcacaatttggtcatggaaactct
ctgcaagggcatggtccttctttaagtgcagctatgtcaaatccattacctattacacag
tttcctttaccagtccaaggtattgcaaataattccttacaattacaggggggagtccat
ccacctttacctccaggtcgccctcctgctccttctcaaatgataccacatccaaatgct
ggtccatatgtatcaaaccaacagccggctgttgcatatactaatttaattagttcgctt
atgtcccaaggcgtaatctcattggctaatcaaccctctggacaggattctgttggaact
gagtttaatccagatattctgaagattcgttatgagtctgcaatcagtgccttgtatgga
gatctccctagacaatgcacgacttgtggactaagattcaaatgccaagaggagcacagt
agtcatatggattggcatgtaacaaagaacaggatgtccaaaagtcgcaaacagaagcct
tctcgtaagtggtttgtgagtgacaggatgtggcttagtggtgcggaggcactgggaaca
gaatcggttcctggttttctgccaaccgagaccgtagaagaaaaaaaagatgatgaagag
ttggcagtgccagctgaagaggaccagaatacatgtgcattatgtggtgagcctttcgat
gagttttacagtgacgaaatggaggaatggatgtatagaggagctgtatacctcaatgca
cccaccggagcaacagtgggcatggacaggtcgcagttaggtcccattattcatgccaaa
tgcagatcagacactaatacgtccccctctgaagatttcgggttggatgaagggggtgcc
aatgaagagggcagccaaagaaaacgaatgcggagttga
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