Arachis ipaensis: 107618047
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Entry
107618047 CDS
T04301
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aip
Arachis ipaensis
Pathway
aip03013
Nucleocytoplasmic transport
aip03015
mRNA surveillance pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107618047
09122 Translation
03013 Nucleocytoplasmic transport
107618047
03015 mRNA surveillance pathway
107618047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107618047
03041 Spliceosome [BR:
aip03041
]
107618047
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107618047
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107618047
Spliceosome [BR:
aip03041
]
Complex C
Other components
EJC/TREX
107618047
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107618047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107618047
NCBI-ProteinID:
XP_016175458
LinkDB
All DBs
Position
B09:complement(1982746..1986958)
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AA seq
495 aa
AA seq
DB search
MLEPKRSVEHHRVIFVITVVAGCYIFSVPFLLFLLSSLCCFSLKPRSRVLFHFNSLQTLN
SQIYAIAQRMGELKDTEAYEEELIDYEEEDEKAPDSAKPAAESGKKGYVGIHSSGFRDFL
LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPLP
GQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVG
TPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHEKQVMMFSATL
SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVV
IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGRQRILVATDLVGRGI
DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDI
KELPEQIDTSTYMPN
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgctggagcctaaaaggagtgtggagcatcacagggtcattttcgtaataacggtggtt
gctgggtgctatatcttctccgttcctttccttctttttcttctctcctctctctgttgc
ttctctctaaaacccagatctagggttttgtttcacttcaattcgcttcaaactttaaat
tcccaaatctacgcaatagctcaaaggatgggcgaattgaaggataccgaggcttacgag
gaagagctcatcgactacgaagaagaagatgaaaaagcccccgattctgcaaaacctgct
gctgaatccggcaagaagggatatgttggcatccatagctcaggattccgagacttcctg
ttgaaacctgagcttcttcgagctattgtcgattcaggattcgagcatccatccgaagtg
caacacgagtgcatccctcaagcaattttaggaatggatgtcatttgtcaagcaaaatct
gggatgggaaaaactgcagtttttgttctttcaacacttcagcaaatcgatcctcttcct
ggtcaagttgcagctcttgttctttgccatacgagagagctagcttatcagatttgccat
gaatttgaaaggttcagcacatatcttcctgatatcaaagttgctgttttctatgggggt
gtcaatattaaggttcacaaagaattgcttaagaatgaatgtcctcatattgtggttgga
acacctgggaggattcttgccctgactagagataaggaccttggcttaaagaatgtgagg
cattttattcttgatgagtgtgacaagatgcttgaatcacttgacatgaggagagatgtg
caagagattttcaaattgactccccatgaaaagcaagtcatgatgttttctgctacactc
agcaaagagatccgacctgtttgcaagaaatttatgcaagatccaatggaaatttatgtg
gatgatgaggccaagttaacacttcatggtcttgttcagcactatatcaaattgcaagaa
tcggagaagaatcgtaagttgaatgatcttcttgatgctctggacttcaaccaagttgtt
atttttgtaaaaagtgttagcagagctgcagagttgaacaagttgcttgtggagtgcaac
ttcccttcaatatgtatacattctggaatgtcacaggaagaaaggttgaaacgatacaaa
ggcttcaaagaagggaggcaaaggattcttgttgcaacagacttagtaggaaggggtatc
gacatagaacgggttaacatagttatcaactatgacatgcctgattctgctgacacttac
ctgcacagggtaggaagagctggtagatttggcaccaaggggcttgcaattacttttgtc
tcttcaacagctgactctgaagttcttaatcaggtgcaatcaaggtttgaagttgatata
aaggagcttccagaacaaattgacacctccacatatatgccaaactga
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