Arachis ipaensis: 107621511
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Entry
107621511 CDS
T04301
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aip
Arachis ipaensis
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aip03036
]
107621511
Chromosome and associated proteins [BR:
aip03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107621511
microRNA pathway
RISC loading complex
107621511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
SWI2_SNF2
DND1_DSRM
SNF2-rel_dom
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
107621511
NCBI-ProteinID:
XP_016179022
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All DBs
Position
B10:complement(112306812..112318196)
Genome browser
AA seq
1681 aa
AA seq
DB search
MDSSNQNQPCPNRTFNHLYTEPCAEESESGSLPSETPQTMDPRGYQLEVFEVAKKRNTIA
VLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIKDLTDFQVQEY
YGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNH
PYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRT
EMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLN
TLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKGFSQCKAFIDVV
MQIVEESLHLDDNKIPELDLNFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERI
ITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVI
EEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNMDQRNKLFDIIRSE
RSVTEAAIYKEDHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPR
AKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALND
HLVPFTEKPPEAEHSVQNQESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAY
RFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMM
YAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGS
LEINWSGISSCAPAVEFLRNKFSLVAGDYDGGSKIVSPCDANSSKVACEGTDKIHFANCV
VDANSIKNRVVLAIHTGRMYCILEADNKLCAESPFDGNDEKSPENHMTFAEYFKKRCQYG
IAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGPANTKMPAHVHIPPELLFILD
VKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNISIPSSLILEALTTLRCCENFS
MERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQD
SAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKT
ISDCVEALIGAYYVVGGLIAALHVMKWLGIDSELEPSLVEEAIAAASLHTYAPKQDEIAT
LEMKIGYKFSVKGLLLEAMTHVSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDID
PGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPG
IKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGS
LGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMTKKIAKGEAAFHLLKDLKKKGISH
GSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVS
LPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDRSLFESSE
GLEGTKGVNCFVSKITLCIPNDGNIECTGEARADKKSSYDSAAVKILHELQRLGKLKIDD
A
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcaaaccagaaccaaccttgtcccaaccgaacttttaatcacttatacaca
gaaccttgtgctgaggaatcagaatcaggttcactcccttccgagacaccccagaccatg
gaccctagagggtatcaattagaagtatttgaagttgcaaagaagaggaacacaatagca
gtattggatacaggtgctggtaagaccttaatagctgtgttgcttatgaagaacattggt
caagctatcaggtccagtggctcgaaaaagttgattattttcttagctccaaccgttcat
cttgtcaaccagcaatataagaatataaaagatcttacagattttcaagttcaggagtat
tatggggcaaaaggagtggacgcatgggatttaagtatctgggagaaggaaattagtgaa
aatgaggtactggttatgacaccccagcttcttttggacgctctaagaaaggctttcttg
aagatggaatcaatatgcttgatgattattgatgagtgtcatcgagcaactggtaaccat
ccctatgcaaaagtaatgaaggaattctatcacaaggctgatgaaaagcctaaaattttt
ggaatgacagcatcaccagtaggtaaaaaaggtgtttcctcttctgtggattgtgagggt
cagatatcagaactggaaagtatcttggattctcggagatatactgtagaagataggacc
gagatggaggtatatataccttctgcaaaagaaagttgtagatattatgaccaggcacaa
ttccctgatttgaatttgaagccaaagattgaagacttgtggtccaagtctggtgcattg
ttatcggaattacaaagctcaactgatggtaactctaaggatgtggagaataaattaaat
acgctgcataagcggatgtccaatgaacttgcaagagtcttgtattgccttgaagatctt
ggcctcctatgtgcttatgaggctgttaaaatatggcatgaaaatttctccaaagtcgaa
ggagagtgtgaagtttaccgaaaaggttttagtcagtgcaaagcattcattgacgtagtc
atgcaaatagttgaagaatccctccatcttgatgataacaagattccagagcttgatctt
aatttttcaaaggcagtagacctgggatacttatctcccaaattacttgaacttattaaa
ctcttccagtcatttggacattcatgtgaggtattgtgccttgtttttgtcgaaagaatc
atcacagcaaaggtgattgaaagatttataaagaaagttccacagatatctcattttaca
gtttcctatttaaccggaaacaatacgtcagctggttcactgactgctaagaagcagaag
gaaacattggattcttttcgttctggaaaggtcaatatattatttacaaccgaggtaatt
gaggaaggaattcatgtgccaaagtgctcatgtgtgatacgttttgacctaccgaacaca
tgtcgcagttatgtccagtctcggggaagatctaggcaggatgactcccaatttattgtg
atgttggagaggggaaacatggatcaaagaaataaactgtttgacatcatcaggagtgag
cgatccgtgactgaagcggctatatataaagaagatcatgcttctaatttaagggtgatt
acggaagtaaaatcaaatatatattatgttgagtctactggagcatcagtcaacttggac
tcaagtgttagtcttttaaatcgatattgtgaaaagctcccatgtgatgagtacccccgt
gcaaagcccaattttgaattcctgccttttgaaggggcatacaggtgtaaattaacatta
ccacctaatgcagctttccaaacaatagtcggtcccttgggtaaagatgtccgtttggca
aggaatcttgtctgtttagaagcttgtaagaagctgcatcagatgcatgccttgaatgat
catcttgtccctttcactgaaaagcctccagaagctgaacatagtgtgcaaaaccaagaa
tctggtacaggatcaggtgcaggaaccacaagaagaaaagaattacatggcacagccagc
attcgagctttatgtggtacaattgaagacaaactagacggagccaaattttatgcctat
agatttgatttcaaatgcagcattgtcggtgaaatcttctcaggatttgttctcctgatt
gagtcaaagtttgacgatgatgttggaaatattgaattagatctttatttgataaaaaaa
accgtaaaggcttccttatctttctgtggacaagtttatttgaatgctgaacagatgatg
tatgcaaaatgcttccatgaggtttttttcaatggtttgtttgggagattggttcataag
tccaaatcagtaaaaggagagagggaattcttgcttcagaaagacacaaaatcactgtgg
agtccacacttctatttgcttctaccactacaaaaaggggatgatgaatctaaaggatct
ttggaaataaattggtctggaataagttcttgtgctcctgcagttgaatttttaaggaac
aagttttcactggttgctggagattatgatgggggcagtaaaattgtgtcaccttgtgat
gctaattcatcaaaggtggcctgtgaaggcacagataaaattcactttgccaattgtgta
gttgatgctaacagtataaagaatcgggtagttttggctattcacactggaagaatgtat
tgtattcttgaagcagataacaagctatgcgctgaaagtccgtttgatggaaacgatgag
aagtctccagagaaccacatgaccttcgcagaatacttcaagaaaaggtgtcagtatggg
attgctatgaaacatccaggacaacctttattacgtttgaagcaaagtcataatgcacac
aatgttcttttgaatttctatgaggaagatgagaaggataagtcatcgcaaattggccca
gcaaacaccaaaatgcctgcgcatgttcacattccacctgagcttttatttattcttgat
gttaaaagacatgttttaaagtcaatgtacttgctaccatcattgatgcatcgtcttgaa
tctctcacgttgtccagtcagcttagacgagagatagatggtcagagtagcaatatcagc
atacctagctctctgattctagaagcactgacaaccttaagatgctgtgaaaatttttca
atggaacgtcttgagttgctaggagattctgttcttaagtttgtagtgagctgtcatctc
tttcttaaatatcctaaggaacatgaaggaaaattatctgatagacggaagtgggctgtt
tgtaattcaactctgcataaactgggaataaatcgcaaattacagggctatatccaagat
tctgcatttgaaccacgccgttgggttgctccaggacagcgttctatacatgttgtttct
tgtgaatgtggggtggaaaccccagaagttcctgtggatggaaaattccagactgaagat
ccaaaagttgtggtcggaaagctttgtgaccagggtcaccgctggatgtgttcaaagaca
atttctgattgtgttgaagctcttataggagcatactatgtagttggcggattgattgct
gcactacatgtcatgaagtggcttggcattgattctgagctagaaccgtccttggttgag
gaagccattgctgctgcatctctccatacatatgcaccaaaacaagacgagattgcaacc
cttgaaatgaaaattgggtataaattttctgttaagggactcttactggaggcaatgaca
catgtatctgaggctgaacttgggattggttgctgctacgagaggcttgaatttctcggc
gactctgtattggatcttcttattacatggcatctttatcagagccataaagatattgat
ccaggagagctgactgacttgcgttctgcttctgtcaataatgacaattttgctcaagtt
gccgttagacgaaacctttacccacaccttctgctcagctctggagatttggtgagccag
atatcagaatatgttaaggtcatttctgaatcagagagcagtaccagatcactcccaggc
attaaagcccccaaggcacttggagatctagtggaaagtattgctggggctatactagtt
gataccaagctcaatcttgatgaagtgtggagaattttcaatcctctgttgtctcccatt
gttacccctgataaacttgaattgcctccgttgcgtgaactaattgaattatgtggctct
cttggatattttatcaaagaaaattgtaaaaggaagggaactactgtgcatgctgagctt
agtgtacaactggaaaacacactcttagttcggaagggaaacggaatgactaaaaaaata
gcaaaaggagaagctgcatttcacttgttgaaagatctcaagaagaagggaatttcacat
ggcagtagcgtgccaaagagaaaaagagagaatcctgactatctatgcgattcgtctaat
ccagaaaccaatattggtatttgcactgctctaacagatggacattcgtcaaagacagta
gcgaataagagggcgaaagtggatgaaactaacacagaagaaattgcatctgctgtttct
ttgccccacaaagactcatctcctgaggactctgattccattccagttattgcatctatc
aatatgaagaaaggaggaccccgaaccacactatatgaactgtgcaagagattacagtgg
ccattgccagaatatgattcaacagagtataaagatagatccctgtttgaatccagcgaa
ggcctggaaggaacaaagggagtcaactgctttgtgtcaaaaataaccttgtgcataccg
aatgatggtaatatagaatgcacaggagaagctagagctgataagaagagttcatatgac
tctgctgcagttaaaatacttcatgagctgcaacgactggggaagcttaagattgatgat
gcttag
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integrated database retrieval system
