KEGG   Arachis ipaensis: 107625321
Entry
107625321         CDS       T04301                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
aip  Arachis ipaensis
Pathway
aip03040  Spliceosome
aip04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:aip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107625321
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107625321
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aip03041]
    107625321
   04121 Ubiquitin system [BR:aip04121]
    107625321
   03400 DNA repair and recombination proteins [BR:aip03400]
    107625321
Enzymes [BR:aip01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107625321
Spliceosome [BR:aip03041]
 Complex B
  Other components
   Prp19 complex
    107625321
 Complex C
   Prp19-CDC5 complex
    107625321
Ubiquitin system [BR:aip04121]
 Ubiquitin ligases (E3)
  U-box type E3
   107625321
DNA repair and recombination proteins [BR:aip03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    107625321
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_DCAF12 RMC1_N WD40_like Beta-prop_WDR35_TULP_N U-box zf-Nse eIF2A PAS_11 Beta-prop_NWD2_C TRAPP14_N PUMA_CC V_ATPase_I_N
Other DBs
NCBI-GeneID: 107625321
NCBI-ProteinID: XP_016183424
LinkDB
Position
B02:58291302..58301760
AA seq 524 aa
MNCSISGEVPEDPVVSKKSGLLFEKRLIETHIADYGKCPITGEPLTLDDLVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLATAERPFPVSANAIPANVSGLSNGKRAAEDDEMAHGGKKMHPGITSAIISE
LTDCNAALSQQRKKRQISTTLAPVESIEAYTQISSHPFHKTNKPGITSLDILYSKDLIAT
GGIDMNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESLLTSSADKTVRVWQGSEDGNY
NCKHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYDLSSGTCLTQVADTSGSSEGYTS
AAFHPDGLIIGTGTTDALVKIWDVKNQSNVAKFDGHTGSVTAISFSENGYFLATAAHDGV
KLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTF
PDLSGTGKVTCVKFGPDSKYIAVGSMDRNLRIFGQPSEDTPTES
NT seq 1575 nt   +upstreamnt  +downstreamnt
atgaactgctccatttccggcgaggtgccggaagacccagtggtgtctaagaaatccggt
cttctttttgagaagcggttaattgagacgcacatagcggattatggaaaatgtccaata
actggagaaccccttacgttggatgatcttgtaccaatcaaaacaggcaagatagtgaag
cccagaccagtgcaggcagctagcatccctggcatgcttggaatgttccaaaatgaatgg
gatgggttgatgctatctaattttgcattggagcaacaattgcacacagccaggcaagag
ctaagtcatgctttatatcagcatgatgctgcatgtcgagtgattgcaagacttaaaaag
gaacgagatgaagctaggtcattgcttgcaacagcagaaaggccattcccagtgtcagcg
aatgctataccggcaaatgtctctggcttgagcaatgggaaaagagctgctgaagatgat
gagatggcacatggtggaaagaaaatgcatcctggaataacttctgcaataatttctgag
ctaactgactgcaatgctgctctttcccagcagaggaaaaagcgacagatttctacaaca
ttggctcctgttgaatctatagaggcttatacccagatatctagccaccccttccacaaa
acaaacaaaccgggcattacatctcttgacatcctgtattctaaggacttaattgcaact
ggcggtattgatatgaatgctgttatttttgacagaccatcaggacaaatattatctaca
ctcagtggtcattctaaaaaggtaaccagcgtaaagtttgtagctcagggcgaatcgtta
ttaaccagttcagcagataagacggttcgtgtgtggcaaggctcggaggatggtaactat
aactgcaaacacatcctgagggatcatacagctgaggtacaagctgtcactgtccatgcc
accaataactactttgtgactgcttcacttgatggcacttggtgcttttatgatctgtct
tcaggaacatgtctgactcaggttgcagacacttcaggttcttctgaaggctatacttct
gcagcttttcatcctgatgggctcattattggaactggcaccacagatgctcttgttaag
atctgggatgtaaaaaatcagtcaaatgttgctaaatttgatggacatacaggatcagta
actgccatatccttctctgagaatgggtacttccttgcgactgcagctcatgatggtgta
aagctttgggatctacgcaaattaaagaacttccgaaattttgctccgtatgactcagaa
actccgacaaactcagttgagttcgatcacagtggatcttaccttgcagttgcaggctct
gatatcaggatttaccaagtcgcaaatgtgaaatctgaatggaactgtatcaaaactttc
ccagatttatctggaacagggaaagtcacctgtgtaaaatttggtccagattcaaaatac
atagcagtggggtcaatggatcggaatcttcgaatatttggccaacctagtgaagatact
ccaaccgagtcgtaa

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