Arachis ipaensis: 107626137
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Entry
107626137 CDS
T04301
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107626137
09123 Folding, sorting and degradation
03018 RNA degradation
107626137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107626137
03041 Spliceosome [BR:
aip03041
]
107626137
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107626137
mRNA degradation factors
5'-3' decay
Lsm complex
107626137
Spliceosome [BR:
aip03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107626137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107626137
NCBI-ProteinID:
XP_016184418
LinkDB
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Position
B02:104067605..104069905
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGRGRGRGREDGPGGRPAKGMGRGLDE
GGAKGPGGGRGRGGPGGKPGGNRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctttctcttctgaagactgcccaaggccacccaatgttggtggagctgaaa
aatggagagacttataacgggcatttggtgaattgtgatacatggatgaacatccatcta
agagaagtcatttgtacctctaaagacggagatagattttggcgtatgccggaatgctac
attcgtggaaacacaatcaagtatcttcgagttcctgatgaggttattgacaaagttcag
gaagaaaccaagagccgtggagatcgcaaaccgcctggtgttggacgtggaaggggaagg
gggagagaggatggtcctggtggacggccagcaaaaggaatgggccgtggccttgatgaa
ggtggagctaaagggccaggaggaggccgaggcagggggggcccaggtggaaagcctggt
ggtaacagaggtgcagggagaggtagaggttga
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