Arachis ipaensis: 107626412
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Entry
107626412 CDS
T04301
Name
(RefSeq) uncharacterized protein LOC107626412 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107626412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107626412
03019 Messenger RNA biogenesis [BR:
aip03019
]
107626412
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107626412
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107626412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-met
Motif
Other DBs
NCBI-GeneID:
107626412
NCBI-ProteinID:
XP_016184773
LinkDB
All DBs
Position
B02:complement(107784782..107791442)
Genome browser
AA seq
973 aa
AA seq
DB search
MSMESSRRPFDRSREPGPKKPRLMEDPNQRPFPQRQLASGITTMSSTRFRANDRDAESSE
SGRGGGGYQPQPLPQHHELVNQYKTALAELTFNSKMIINNLTIIAGENQSAAKAIAATIC
ANILEVPNDQKLPSLYLLDSIVKNIGRDYTKYFAAKLPEVFCKAYRQVEPAIHQSMRHLF
GTWEGYIPPQTLQAIEKELGFTPPVNGSAASSATIRSNSQSPRPPHGIHVNPKYLERQRL
QQSSRIKGVDEITGACANSNEDPERPDRTLGVARPWLDPSVSTPRDAFNDSVLEKSVGVT
CGGNEYGSDLSRNLGSGMVRAGDKSWFKAGGVPGTISGQRNGFSEKHSFSNTEAPKYNQP
TQNINSIRSSVMSRSWKNSEEEEYIWDEMNSRSTGLGAPNVSNNLSKDSWPADDENFEVE
DPVQIRNPYGANLDRELATLGNEKKRFSSFQRHPSVPWQLQEQHSLEELNQKPGHSEGFM
STLSGLPANTNSAVRMGNRSFLPNATTGLPGIVGQQQLHSIGVESPSGQSPLRQQSSPPP
VGNLRRPHQKDLPGSFSSATPFQSRHQQQLHLSHNEVTKKPPPLSRVALAKETLEQSTTG
SVEAAALNGGTLSSMSNASRLDSRNLPSQLGVRPARSAGPSPATLSSLVSAISAPSSLGP
SNNSLSALPKVPERKAGQLTRASTLPPASSDVSVASAQTTSASSNTSNPIANLLSSLVAK
GLISAEKESQTKVTSEFPAQLEDERDSITTSSSLPVASVSGSAAVPLPSATDDVNDTAKS
PTSLSETTSTEIRNLIGFEFKPDVIREVHPPVIKGLFDDLPHHCDICGRRLKFQEQFNRH
LEWHATRGKNDLIRASRGWYPKSIDCIVSKGESSSTSEFSGSVDTYSKETRSTQEDSMVQ
ADESQCLCVLCGEVFEDFYCQESGEWMFKGAVDMTNSDSELGNRNASTTRGPIIHARCFS
GNSISSFVKMEQD
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggagagttcacgtagacctttcgatagatcgagagagccagggcctaagaag
cctcgattgatggaagacccgaatcagagaccgtttcctcagcgacaattggcttcaggg
attacaacgatgtcgtcaacgaggttcagagcaaacgacagggacgcagaaagcagtgaa
tccggccgaggcggtggcggttaccagccgcagccgctgccgcagcaccatgagcttgtg
aatcagtacaagacagctcttgctgagctcactttcaattcgaaaatgatcattaacaat
ttgactataattgcaggcgagaatcaatcggctgcgaaggcgattgccgccactatttgt
gctaacattctagaggttcccaatgatcaaaagctgccatctctttatctcttagacagt
attgttaagaacattgggcgggattatacaaagtactttgctgccaaactacccgaggta
ttctgcaaggcatacagacaggttgaacctgctatccatcaaagtatgagacatcttttt
ggaacttgggaaggatacattcctcctcagacccttcaggctattgagaaggaactcggc
tttactccaccagtaaatggttcagctgcctcatctgctaccatcaggagcaattcacag
tccccacgtcctcctcatggcatccatgtgaatcccaagtatttagagaggcaacgtctt
cagcagtccagcaggattaaaggagttgatgaaattactggagcatgtgcgaactccaat
gaggaccccgagaggccggatagaactttgggtgttgcacgaccatggttggatcctagt
gttagtaccccaagagatgcatttaatgattctgttttggaaaagagtgttggtgtaacc
tgtgggggcaatgaatatggttctgatctttcacggaatttgggctcaggtatggtcaga
gctggtgacaaaagttggtttaaagcaggtggagttccgggaaccatatctggccaaaga
aatggtttcagtgagaagcatagtttttcaaatactgaagcaccaaaatataatcagcca
acacaaaacataaatagcattcggagcagtgtgatgtcacgtagctggaaaaattctgag
gaagaggagtacatatgggatgagatgaattctagatcgaccggtcttggtgcaccaaat
gtctctaacaacttgagcaaagattcttggccagcagatgatgagaattttgaagttgaa
gatccagtccaaataagaaacccctatggggcaaatcttgatagagaattggccactcta
ggcaatgaaaagaaacgattttcctcatttcagcgtcatccatcagtaccgtggcaactg
caggagcagcactcacttgaagagttgaatcaaaagccaggtcactcggaaggatttatg
tccactcttagtggtctgccagccaatacaaattctgctgtcaggatggggaatcggtct
ttcttgccaaatgcaacaacaggactgccaggaattgtgggacaacaacaacttcactcg
attggagttgaatccccttctgggcagtcacccttgcgacaacaatcttcaccaccacca
gttggtaacttgcgaagaccacatcaaaaggatttgccaggttcattttcttcggcgact
ccttttcagtcaaggcatcagcagcagcttcacctgtctcacaatgaagttaccaagaaa
cctcctcccctgtctagagttgcgctagccaaagagactcttgaacagtcaaccacaggt
agtgtggaagctgctgctctaaacggtggaacattatccagcatgtccaatgcaagtcgt
ctggattcaaggaatcttccgtctcaattaggtgttcggcctgcccgctcagctgggcct
tcccctgccacattaagttccttggtgtctgcaatttcagcgccatcttcattaggtcct
tcaaataatagtttatctgctttgccaaaagtacctgaaagaaaggctgggcaattgaca
agggcatcaactctaccaccggcttcctctgatgtcagtgttgcctctgctcagacaaca
agtgccagcagtaatacctcaaatccgattgcaaaccttctaagctctttagttgcgaag
ggtttgatatctgcagaaaaagaatcacaaactaaggtgacatctgagttcccagctcag
ttggaagatgaaagagacagcattaccaccagtagctctttgcctgttgcttcagtgtct
ggttctgcagctgttccattaccttctgccacagatgatgtaaatgatactgcaaaatcc
ccaacatccttatctgaaacgaccagcacagagatcagaaacctcattggctttgagttt
aagcctgatgtaatccgagaagtgcatccacctgtcattaaaggattatttgatgatctc
cctcatcattgtgacatttgtggccgtaggcttaaattccaagagcagtttaatagacac
ttggagtggcatgccacaagggggaaaaatgatctaattagggcatcaagaggatggtat
ccgaagtcaattgattgcattgttagcaagggtgaatcttcatccacgtctgagttttcc
ggatctgttgatacatacagcaaggaaacaagaagcactcaagaggactcgatggttcaa
gcagatgaaagccaatgcttgtgtgtgttgtgtggtgaggtatttgaagatttctactgt
caagaaagtggtgagtggatgttcaaaggggccgttgacatgactaactcagatagtgag
ttgggaaatagaaatgctagtactacaaggggtcccattattcatgcaaggtgcttctca
ggaaactctatatccagtttcgtcaagatggaacaagattaa
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