Arachis ipaensis: 107629153
Help
Entry
107629153 CDS
T04301
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107629153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107629153
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107629153
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107629153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107629153
NCBI-ProteinID:
XP_016187344
LinkDB
All DBs
Position
B03:4119882..4125592
Genome browser
AA seq
651 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPVFHHTGSLQGLHNIHGSFNVPNM
PGTLTSRNSTINSVPSGGVQQQTGSLSSGRFGSNNLPVALSQLSHGSAHGHSGVANRGGI
NVVGNPGFSSSTNGVGGSIPGILPTSAAIGNRNAVPGLGVSQILGNAGPRITSSVGNMVG
GGNLGRTGGGLSVPGLTSRHLSANSGSAGLGVQGQNRLMSGVLPQGSPQVISMLGNSYPN
AGGPLSQSHVMGMLNDVNSSDNSPFDMNDFPQLTSRPSSAGGPQGQLGSLRKQGLSPIVQ
QNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFPMGRSAGFSLGG
TYSSHRTQQQQQHAPSVSSGGVSFSSVNNQDLLHLHGSDIFPSTHSTYHSQASGPPGIGL
RPLNSPNTVSSMGQYDQILQQYQQHQNQSQFRLQMSAVNQSFRDQGMKAMQTAQSTPDPF
GLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVP
QCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELHNRGWYYHKENRFWFI
RVPNMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYEMLEKRPPLPQH
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggctacttaattcttctctgaacggttctgcttcaaatcttccagatggtgct
gggaggtcttttgctacttcattctctggtcagtctggtgcagcctcccctgtctttcat
catactggatcccttcaaggactgcacaatattcatgggagctttaatgtacccaacatg
cctggtacactcacatcaagaaactcaacaataaatagtgtcccatccggtggtgttcag
caacaaacaggtagcctttctagtggaaggtttggttccaacaatctgcctgttgcatta
tctcagctatctcatggaagtgcccatggacactcgggagttgccaatagaggaggtata
aatgttgtaggaaaccctggatttagtagtagcacaaatggagttggaggttctattcct
gggattcttccaacatccgctgcaattggtaaccgaaatgctgttccaggattgggagta
tcccaaattttgggaaatgcaggtcctcgaatcacaagttctgtgggaaacatggttgga
ggggggaaccttggaaggactggtggaggattgtctgtacctggtctcacatcccgtcat
ttgagtgcaaacagtggatctgctggcttaggagtacagggacagaatcgattgatgagt
ggtgtgcttccacaaggatctccgcaggtgatttcaatgctagggaactcttatcccaat
gctggtggtccactttcacaaagccatgttatgggtatgttgaatgatgtaaactcgagt
gataattctccttttgacatgaatgacttccctcaactgactagtcgacctagttctgct
ggagggcctcaaggacaattgggttctttacggaagcagggtcttagtcccatcgttcaa
caaaaccaagagtttagtattcaaaatgaagatttcccagctttgccaggattcaaaggt
ggcaatgctgattatgctatggatatgcaccagaaagaacagcttcatgacaatgctgta
ccaatgatgcaatctcaacatttcccgatggggaggtctgctggttttagcttgggggga
acatattcatcacatcgtacacaacagcaacaacaacatgctccttcggtgagtagtggt
ggtgtctcattttcatctgtaaacaaccaggatcttctccatctacatggatcagatatt
tttccatctacacattcaacttatcattcgcaggcaagtggacctcctgggattggatta
aggccactaaattctccaaatacagtctctagtatgggtcagtatgaccagatcctccag
cagtatcaacagcaccagaatcagtcgcagttccgccttcaaatgtcagccgtaaatcag
tcgtttcgggatcagggcatgaaagctatgcaaactgcacaatccacaccagatccattt
ggtttgcttggcttgttaagtgtgatcaggatgagtgatccagacttgacatctcttgca
cttggaattgatcttactacacttggattaaatttgaattcatcggaaaatctacacaag
acgtttgggtctccatggtctgatgaacctgcaaagggtgatccagagtttaatgtgcca
caatgttattacgcaaagcagccccctgctttacatcaaggttacttttcaaagttttcg
gtggaaacattgttttacatattctacagcatgcccaaagacgaagcacaattatatgct
gcaaatgagctgcacaatagaggttggtattatcacaaagagaatcgtttctggtttata
agagttcccaacatggagccccttgttaaaacgaacacatacgagagaggatcttatcac
tgtttcgatccaaacacatttgaaactgttcgcaaggataactttgttctacattatgaa
atgttggaaaagagaccgcctctaccacagcattga
DBGET
integrated database retrieval system
