Arachis ipaensis: 107629713
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Entry
107629713 CDS
T04301
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03020
RNA polymerase
aip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107629713
09124 Replication and repair
03420 Nucleotide excision repair
107629713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107629713
03400 DNA repair and recombination proteins [BR:
aip03400
]
107629713
Enzymes [BR:
aip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107629713
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107629713
DNA repair and recombination proteins [BR:
aip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107629713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Endotoxin_C2
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
107629713
NCBI-ProteinID:
XP_020973884
LinkDB
All DBs
Position
B03:complement(13686278..13694639)
Genome browser
AA seq
1732 aa
AA seq
DB search
MDIRFPYSPAETANVRTVQFGILSLDEIRRNSVVEIEHGESSEKGKPKVGGLSDPRLGTV
DRKIRCATCTADMAECPGHFGHLELAKPMFHVGFLKTVLTVMRCVCFNCSKLLAREVXFQ
MFXEPCIELIGGRSLVAFVQFEFYLNSCLVVXLFKLTMVLEQDKKFEQALKIGNPKNRLK
RILDACKNISKCQGGEDSEELVRIGCGALQPKITIDGMNMIAEYKALRNKNNDHEQLPEP
EERKQILSAERVLGVLKRISDEDCELLGLNPQFARPDWMILQVLPIPPPPVRPSVMMHSS
CRCEDDLTHQLATIIKHNENLKRHEKNGSPQHIVSEFSKLLQFHITTYFDNELPGLPRAT
QRTGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLT
YPETVTPYNIERLKELVEYGPNPPPGKTGAKYIIRDDGQRLDLRYLKKNCHPHLEIGYKV
ERHLMDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTKPYNADFDGDEMNMHVP
QSFETRAEVLELMMVPKCIVSPQSNRPVMDIVQDTLLGCRKITKRDTFITKDVFMNILMW
WEDFDGNVPTPAILKPEPLWTGKQVFNLIIPKQINLTRYSSWHDDNEGGSSITPGDTMVR
IEKGELLTGTLCKKTLGASTGSLIHVIWEDAGPDAARKFLGHTQWLVNYWLLQNSFSIGI
GDSIADASTMEVINQTISEAKEKVKKLFRDAQEKKLESEPGQTMMDTFERKVNEVLNEAR
NDAGKKAQTSLSESNNLKAMVTAGSKGSFINISQMTACLGQQNVEGKRIPFGFIDRTLPH
FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGIIDTAVKTSETGYIQRRLVKAME
DIMVKYDGTVRNSVGDVIQFLYGEDGMDAVWIETQNLDSLKMKKSDFDRTFKYEFDKENW
NPSYMLEGSIKDLKSSIELRNVLEAEVEMLEHDRHLLATEIATTGASSLPLPVNLKRLIR
NAQKTFKIDFRMPSDMDPIEIVEAVDKLQERLKVVPGDDLLSQEAQKNATLLFNILLRST
FASKRVLEEHRLSREAFEWLVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFH
YAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLNPETGKTKERAKGVQCALEYTTLRS
VTQATEVWYDPDPQSTIIEEDVDFVKSYFEMPDEEVPLDKMSPWLLRIELNREMMVDKKL
SMADIAEKINHVFDDDLKCIFNDDNAEKLILRIRIMNDEAHRGEIQDDSADDVFLKRIES
NMLTEMTLRGISGISKVFIKSIDVPKFDDNEGFQTHKEWMLETEGVNLLAAMCHEQVDAT
RTISNHLIEIIEVFGIEAVRRALLNELRAVISFDGSYVNYRHLAILCDTMTYRGHLMSIT
RHGINRNDTGPMMRCSFEQTVDILLDAAAYAEADHLRGVSENIMLGQLAPLGTGQCSLYL
NDEMIKNAFDLQLPGYMDGLDFGMTPAHFSMSTPYLDGLMSPTHLSSPNLRPSPINNAVF
SPYGMACGYCTYRSNYSISSPAYDPVSPKYTPTDPGYSPVSPSYSPLSPTYSPVSPTYSP
ISPAYSPFSPGCSLTSPSCSPISPAYSPSSPGYSPTSPSYSPTSPYYSRLSAEYSPTSPY
YSPSSPSYSPSSPTFSPSSLDFSLTSPQFSASTEYSPSRPGYSQASTSQYTP
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggatattaggtttccttattcgccggcggaaactgcaaatgtccgtacggttcagttc
ggaattctcagcctcgacgaaatcaggagaaactctgtggtggaaatcgagcacggggag
agctcggaaaaggggaagccaaaggtcggagggttgagcgaccctcgccttggaaccgtt
gataggaagatccggtgtgccacgtgtacggctgatatggctgagtgcccggggcatttc
ggtcacttggagctcgctaagccaatgtttcacgttggtttcttgaagacggtgctcacc
gtcatgcgttgtgtttgcttcaactgctccaagcttttggcgcgtgaggtctgatttcaa
atgttttgagaaccatgcattgagttaataggaggaaggagcttagttgcttttgttcaa
tttgaattttatctgaattcttgtttagtagtcnntctttttaagttgactatggttttg
gagcaggataagaagtttgaacaagctttgaagattgggaaccccaaaaacaggctgaag
aggatcttggatgcttgcaaaaacataagcaagtgtcaaggtggtgaagattctgaggag
ctggttcgaattggctgcggtgccttgcagcccaagattactattgacggtatgaacatg
attgctgagtataaggctctgaggaacaaaaacaatgaccatgaacagcttcctgaacct
gaagaaaggaaacagattctttctgcagaaagagttcttggtgttctaaaaaggataagc
gacgaggactgcgaattgttgggcttgaatccgcagtttgcccgtcctgattggatgatc
ttgcaagttcttccaattcctcctccaccagtgagaccttctgttatgatgcactcatcc
tgtaggtgtgaggatgacttgactcatcagttagccacaatcatcaagcacaatgaaaat
ttgaagagacatgagaaaaatggatcacctcagcatattgtttcagagttttctaagttg
ttgcagttccatataaccacatattttgataacgagttgccgggactgccaagagctact
caaagaacaggaaggcctatcaaatcaatttgtagcaggcttaaagccaaagaaggtcgg
attagaggaaatttgatggggaaaagagttgatttttctgctcgaacggttattacacca
gacccgaacattaacattgatgaactcggagtgccatggagtattgctttgaaccttaca
taccctgagactgtaactccatataatattgaaaggttgaaggagcttgtagagtatgga
cccaatcccccacctgggaaaactggtgccaagtacatcattcgcgatgatgggcaaagg
cttgatctcagatatttgaagaaaaattgccatccccatttggagataggatacaaggtg
gagcgccatttgatggacggagacttagttctcttcaatcgtcagcctagtcttcataaa
atgtccattatggggcacagaatcaaaatcatgccttattctacgtttcggcttaatttg
tcggtaactaagccttataatgctgattttgatggggatgaaatgaacatgcatgttcct
cagtcatttgaaaccagagcagaggtgttggagctcatgatggtgcctaaatgcattgtg
tctcctcaatcaaacagaccagtaatggatattgttcaagacacactattaggatgcaga
aaaatcaccaagagagataccttcatcacaaaggatgtatttatgaacattctaatgtgg
tgggaagatttcgacgggaatgttcctacaccagcaatattgaagccagaaccattgtgg
actgggaaacaagttttcaatcttattattcccaagcaaataaatttaactaggtattct
agctggcatgatgataacgaaggaggatcatcaataactccaggggatactatggtcaga
attgaaaaaggggaactacttaccggaactctttgcaaaaagacacttggagcatctact
ggaagtctcattcatgtcatttgggaagacgctggccccgatgcagctcgtaaatttctt
ggtcacactcagtggcttgtaaactactggcttctgcagaattcttttagcattggaatt
ggtgattcgattgcggacgcttccactatggaggttattaaccagactatttcagaggca
aaggagaaagtgaaaaaactattcagggatgctcaagaaaagaagttggagtctgaaccc
ggtcagacaatgatggacacatttgagaggaaagtgaatgaggtgctgaacgaagctcgt
aatgatgccgggaaaaaagcgcagacaagtttatctgagagcaataatctgaaagcaatg
gtgacagctggttccaaaggaagttttatcaatatatctcagatgactgcttgtcttggt
caacagaatgttgaaggcaagcgaattccatttgggttcatagataggacactgccacac
tttacaaaagatgattatgggcctgaaagccgaggctttgtggagaactcgtatcttcga
gggctgaccccacaagagttctttttccatgccatgggaggtagggaaggtattattgat
actgcagtgaagacctctgaaactggatacatccaaaggcggcttgtgaaggctatggag
gatattatggtcaaatacgatggaactgttaggaactccgtaggagatgtcatacaattt
ctctatggagaagatggtatggatgctgtttggattgaaacacagaatcttgattccctg
aaaatgaaaaagtcagactttgataggacctttaagtatgagtttgataaggagaactgg
aatcctagttacatgcttgaagggtctattaaagacttgaaatccagcatagagcttcgt
aatgtacttgaggctgaagttgaaatgcttgaacatgatagacatctgcttgcaactgag
attgccactactggtgctagttctcttccactgcctgttaaccttaagaggcttatcagg
aatgctcagaagacatttaaaatcgactttcgaatgccttctgatatggacccgattgaa
attgtagaagctgttgataagctacaggagagacttaaagttgttcctggtgatgatctc
cttagtcaagaagctcagaagaatgctaccctcttgttcaatattttgctccgcagcact
tttgctagtaaacgtgttttggaagaacataggctctctcgtgaggcatttgagtggcta
gtgggagaaatagaatcaaggttcctgcagtcacttgtagcctctggggaaatgattggt
tgtgtagcagcgcaatcaattggtgagcctgctactcagatgactctcaacaccttccac
tatgctggtgttagtgctaagaacgttacacttggtgttccgaggttaagggaaatcatt
aatgttgcaaagaggatcaaaacaccttctttgtcggtatttttgaatcccgagactggc
aagactaaagaaagggccaagggtgtgcagtgtgctttagaatatactactcttaggagt
gtgactcaggctacagaggtttggtatgatccagacccccagagtacaataattgaagaa
gatgttgattttgtgaagtcttactttgaaatgcccgatgaagaagttcctcttgataaa
atgtcaccttggttgcttcgcatagaactgaatcgtgaaatgatggtggataagaagttg
agtatggctgacattgctgagaagattaaccatgtgtttgatgatgatttgaaatgtatt
ttcaatgatgacaatgctgaaaagctcatacttcgaatccgaatcatgaatgatgaagcc
caccggggagagattcaggatgattctgctgatgatgttttcttaaagagaatagaaagc
aacatgcttactgagatgacattacgtggcatctctggcatcagcaaagtttttataaaa
agtattgacgttccaaaatttgatgacaatgaaggttttcagactcataaggaatggatg
cttgaaactgaaggtgtcaaccttttagctgcaatgtgccatgagcaagttgatgcaaca
aggaccataagcaaccaccttattgaaattattgaagtctttggaattgaggcagttcgg
cgggctcttctgaatgaattgcgtgctgtcatctcttttgatggatcttatgtcaattac
aggcatctcgctattctttgtgatactatgacttatcgtggccatttgatgtcaattacg
cgccatggtatcaaccgaaatgataccggtccaatgatgagatgctcatttgaacagact
gttgatattctccttgatgctgcagcatatgctgaggctgatcacttaaggggtgtcagc
gaaaacatcatgttaggccagcttgcgccccttggcactggacaatgctctctgtatctt
aatgatgagatgattaagaatgcatttgatctccagctacctggttatatggatggtctt
gactttggcatgacacctgctcatttctccatgtcaactccctatcttgatggcttgatg
tcaccaactcatttgtccagtccaaatctgcgcccatcaccaattaataatgcagttttt
tcaccttatggaatggcctgtggttactgcacatatcgaagtaactacagtatatcttca
cctgcttatgatccagtttcacctaagtacactcccactgatcctggatatagccctgtg
tcaccaagttatagtcctctttccccaacttacagcccggtgtctccgacatatagtcct
atatcacctgcatatagccccttctctcctgggtgcagccttacatcaccaagctgtagt
cctatatcacctgcatatagcccctcttctcctgggtacagccctacatcaccaagctat
agtcctacttccccttattacagtcggttatctgcagagtatagtcccacatcaccatac
tatagcccctcatcaccatcttattctccatccagcccaacatttagtccaagcagtctg
gatttcagcctaacttctccacagttcagtgcttcaacggaatactcgccaagtcgacct
ggttactcacaggcatcaaccagccaatacactccatag
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integrated database retrieval system
