Arachis ipaensis: 107630559
Help
Entry
107630559 CDS
T04301
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
aip
Arachis ipaensis
Pathway
aip03013
Nucleocytoplasmic transport
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107630559
03015 mRNA surveillance pathway
107630559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107630559
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107630559
mRNA cycle factors
P-body specific factors
107630559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Cytomega_UL84
Xpo1
Motif
Other DBs
NCBI-GeneID:
107630559
NCBI-ProteinID:
XP_016189224
LinkDB
All DBs
Position
B03:76405271..76423180
Genome browser
AA seq
1177 aa
AA seq
DB search
MEPQPEEAVARLEELQKSIEAKMTLRQSNLNPDRPDSGFLRTLDSSIKRNTAVIKKLKQI
NEEQRETLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQVCSLLHQRYKDFAPCLI
QGLLKVFSPGKPGDESDADRNLKAMKKRSTLKLLLELYFVGVIDDGNIFMNIIKDLTGMD
QLKDRDAAQTSLTLLSSFARQGRIFLGLPVSGPEIHEEFFKGLNITADQKKVFRKACYAF
YDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNISSLAEA
LDMQPPVMPEDGHTTRVTTGEEATSAGGKDSSIAEPVWDDEDTRAFYECLPDLRAFVPAV
LLGEAEPKTSEQSVKSQDQPTEIVPESDKGQLGNHDSGDASAESIALPEGGSAEKAKDKE
EREKSKELEREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEF
CYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLI
NKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGR
FLYRSPETTIRMTNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLH
QYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFLKVYKGKYGQIHLIASLAAGL
SRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLY
LIVIYGHGTPEQDALDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILS
KGALPLDIEFDLQDLFAELRPNMVRYTSVDEVNAALVELEEHDRMVSADKASSEKHSDTE
KPLSRTSSNTVVSNGQRIDNGAEENGVQDDVNDSDTDSGSGTIDAEGHDDEELDDENHDD
GCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFEQELKAVLQESMEQRRQE
LRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALSEETGGNKEVQVRVLVKRGNKQQ
TKQMYIPRDSSLVLSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGSQPTNWMLSGG
NRTGGRGNTLEGTSSRSGGRHRHHNYTGSGIYYGRRR
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcagcctgaggaggctgttgcacgccttgaggagttgcaaaagtcaattgag
gcaaagatgacattacgacaaagcaatttgaatcctgataggcctgactcaggattttta
aggactctggattcaagcattaagcgcaatactgcagtcattaagaaactgaagcagatt
aatgaagagcagcgtgaaacactgatggacgagttgcgcagtgtcaacttaagcaaattt
gtcagtgaagctgtgactgctatatgtgatgccaagcttagaagctcagatatacaagca
gcagttcaggtctgctctttgcttcatcagaggtacaaggactttgccccatgcctgatt
caaggacttctcaaagttttctctccaggaaagcctggggatgagtcagatgcagacaga
aacttgaaggcaatgaagaaacgcagtactttgaaacttctattggagctttattttgtt
ggagttattgatgatggcaacattttcatgaatatcataaaagatctaactggtatggat
cagctaaaagaccgagatgcagcacaaactagtttgacccttctttctagctttgcccga
caagggagaatctttctgggacttcctgtttctggtccagaaattcatgaagagtttttt
aaaggccttaacattacggcagatcaaaagaaagttttcaggaaagcatgttatgcattt
tatgatgctgcagcagaactacttcagtctgagcattcttcacttcgactaatggagcat
gaaaattctaagattcttaacgcaaaaggagagctcagtgatgaaaatattgcttcatat
gaaaagcttcggaaatcttatgaccatttgtatcgtaacatctcatcattggcagaggca
cttgatatgcaacctccagtaatgccagaagatggtcacacaacaagagttactactggt
gaggaagctacatctgcgggtgggaaagattcttctatagctgaacctgtatgggatgat
gaagatacaagggctttctatgaatgtttacccgacctaagagcttttgttcctgctgtg
cttttgggcgaagcagagccaaaaacaagtgagcaatcagtgaagagtcaagaccaacca
actgaaatagtacctgaatctgacaaaggtcaactgggcaaccatgacagtggagatgca
tcggcagaatctattgctttgccagagggaggaagtgcagaaaaagcgaaggataaggaa
gaaagagaaaaatcaaaagaattggaaagagagaaggagaaagaaaaagacaatgacaaa
aagggggaaaatgaaaaggacaaactcagaagccttgaggggacaaatttggatgcttta
ttgcaaagacttcctggttgtgtgagccgggaccttatagatcaattgactgtagaattc
tgttatctaaattcaaaatcaaatcggaaaaaacttgtgagggctttgttcaatgtacca
aggacatctctggagctgctaccatattactcacgcatggttgctacactctcaacttgt
atgaaggatgtctcctccattcttttgcagatgttggaggaggaattcaacttcttaata
aataagaaggaccagatgaatattgagacaaagataaggaacatcaggttcataggagaa
ctttgcaagttcaaaattgcccctgctggcctagtctttagttgtttgaaggcctgttta
gatgattttactcatcacaacattgatgtagcttgcaatcttcttgaaacatgtggccgt
tttctataccggtcaccagaaactactatacgtatgacgaacatgttagagatactgatg
cgcttgaaaaatgtgaagaacttagatccaagacatagcactttggtggaaaatgcatat
tacctttgtaagcctccagaaagatctgcacgagtggctaaagtccgtccaccattgcat
cagtatatcagaaaattacttttctctgatctggataagtctaccattgagcatgtgttg
aggcaacttagaaaattaccatggagtgaatgtgaaccatatcttttgaaatgtttcctg
aaggtctataaagggaaatatggccagatccatctgattgcttctcttgctgctggttta
agtcgctaccatgatgagtttgcagtggctatagttgatgaggttttggaggagattaga
gttgggctggaactaaatgactatgggatgcagcaaagacgcattgcctacatgagattc
ttaggggagctttacaactatgagcatgtggattcatctgttatttttgagacactatat
cttatcgtcatctatggccatgggacaccagagcaagatgcactggatccacctgaagat
tgttttcgtataagattgatcattactcttcttgaaacctgtggacattactttgatcgt
ggctcttcaaagaggaaacttgatcgattccttatacacttccagaggtatattttaagc
aaaggtgcactgcctctcgacattgaatttgacttgcaggatctgtttgcggagttgcgc
cccaatatggttagatatacatctgttgatgaagtgaatgcagctctagtagaacttgaa
gaacatgatcggatggtttctgctgataaggccagtagtgaaaaacattctgatactgag
aagcctttgagtaggactagttctaacacagtggtaagcaatggacaacgcattgataat
ggtgcagaagagaatggagtgcaagatgatgttaatgacagtgacactgactcagggagt
ggcaccattgatgcggagggacatgatgatgaagagttggatgatgagaatcatgacgat
ggatgtgagactgaggatgatgatgatgatgatgatgatgggcctggacctgcttctgat
gaggaagacgaagtccatgtgagacaaaaggtgacagaggtggaccctctggaggaagcc
aattttgaacaggagctgaaggctgtgttacaggagagtatggaacagcgaaggcaggag
ctacgaggccgtcctacattgaacatgatgattccaatgaatgtatttgagggatccact
aaggatcatcatgggagaggagttggtggtgaaagtggtgatgaggcattgagtgaggag
accggtggaaacaaagaggttcaagtgagagttcttgtgaagcgtgggaacaagcagcaa
acaaaacagatgtacatcccacgggattcctcactggttctgagtacaaaacagaaagaa
gcagctgagcttcaagagaaagaagacattaagaggcttgtcttggagtataatgataga
gaagaggaggagcttaatggactagggtcccaaccaacaaattggatgttgagtggcggc
aacaggactggtggccgtggcaacactttggaaggaaccagcagtaggagtggcggacgg
catcggcatcacaattatactggcagtggcatctactacggcaggaggaggtaa
DBGET
integrated database retrieval system
