Arachis ipaensis: 107631787
Help
Entry
107631787 CDS
T04301
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
aip
Arachis ipaensis
Pathway
aip03013
Nucleocytoplasmic transport
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107631787
09122 Translation
03013 Nucleocytoplasmic transport
107631787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107631787
03041 Spliceosome [BR:
aip03041
]
107631787
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107631787
Spliceosome [BR:
aip03041
]
Complex C
Other components
EJC/TREX
107631787
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107631787
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
ABPF_N
Motif
Other DBs
NCBI-GeneID:
107631787
NCBI-ProteinID:
XP_016190822
LinkDB
All DBs
Position
B03
Genome browser
AA seq
1881 aa
AA seq
DB search
MSLPPIECIYVTEDCVREWKSGNPALRVSEPVPSLRFLYELCWTMVRGELPFQKCKVALD
SVIFSDRPPTEKLASNFADIVTQMAQDHTMSGEFRSRLIKLARWLVESELVPVRLLQERC
EEEFLGEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAP
TQKASAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNSVFLELIPIFPKSHASQILG
FKFQYYQRMDVSCPVPFGLYKLTALLVKQDFIDIDSIYAHLLPKDEEAFEHYNTFSSKRL
DEANKIGRINLAATGKDLMDDEKPGDVAIDLFAAIDMETDAIEERKSELQNSQTLGLLTG
FLSVDDWYHAHMLFGRLSPLNAVEHIQICESLFRLIERTISSAYDVIRHAHHQNSGSSTG
VSTDPMDVDNSSRRSSFIDLPKELFQMLACTGPYLYRDSILLQKVCRVLRGYYFSALELV
SHGDSALNSQFPGIGNPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWELMSLL
PYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENL
TEEQLDAMAGSDTLRYQATSFGVTRNNKALLKSTSRLRDALLPKDEPKLAIPLLLLIAQH
RSLIVINADAPYIKMVSEQFDRSHGTLLQYVEFLCSAVTPASNYAALIPSLNDLVHLYHL
DPEVAFLIYRPVMRLFKSQRSPDVCWPLDDNNAANDASTESDLVDHSGSMVLDLGSARNP
IRCHSIWQTXVXKSVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKSRYESEIAKLHAS
LKSLEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVHRRLSHEKDKWLSS
CPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQ
PMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYG
QFIKVHWKWSQRITRLLIQCLESSEYMEIRNSLIMLTKISGVFPVTRKSGINLEKRVAKI
KSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSISKSSAGNSASVQSGI
SLGVSQTESGSGKHLDSVNTVKDQTKIKTADSKVERTDSTIAGKSDSGQAKLKGNSSLNG
LDAPSTLPSPAVQSGATKSMENQKQAEESVSRASEEHVPRAAESRASGKRSAPASSHSKP
SKQDPAKEDTRSGKAVARASGSLSSDKDIQNHASEGRHTGSTNLSSSVNANGNSISASAK
ISAPSTKGETGSELKAEMGGVKSSDIRASVVKDDGNDVIDSVRGSSSRVVHSPRHDNTIV
TSKSTDKAQKRASSAEEPDRLGKRRKAEAEQRDVENEIRLSEREKLVDPRLSDEKLGPEE
LGLYRAGDKPLERAKDKGNERYEREHRERLDRVDKSRGDDFIVEKPRDRSIERYGRERSV
ERMQERGSERGFNRLPEKAKDDRSKDDRSKLRYNDVSIEKSHADDRFHGQSLPPPPPLPP
NMVPQSVGGGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEEAVVSQDDAKRRKEDDFR
DRKREEREALSLKVEERDRERERDREKTNLLKEELDLNAASKRRKLKREHLPAGEPGEYS
PVAPPPPPLGIGVSQAYDGRDRVDRKGPMIQHANYIDEPGLRIHGKEVASKLNRRDSDPM
YDREWDDEKRQRADQKRRHRK
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgccacccatagagtgtatttacgtaacggaggactgtgttcgcgaatggaag
agtggcaatcctgccctcagggtttccgaaccagttccatcgctacgcttcctctacgag
ctttgctggactatggttcggggtgaattgccgtttcagaagtgtaaagtagcgttagat
tctgtcatattctccgacagaccgccgactgagaaattagcttcaaattttgcagatata
gtgacccaaatggcccaagatcatacaatgtcgggagagtttcgatctcgtctcattaaa
ctggcaagatggcttgtggaatctgaattggttccagttaggctacttcaagaacgttgt
gaggaagagtttttgggggaggctgaaatgatcaaaataaaggctcaggatttgaaggga
aaagaggtcagagttaatacacggcttctttatcaacaaaccaaatttaaccttcttaga
gaagagagtgagggctatgcaaagctggtcactcttctttgccgagattccgaagctcca
actcaaaaggcatctgccgcaacaattggcattattaagtcgttaattggccattttgat
ttggatccaaatcgtgtttttgatattgttcttgagtgttttgaacttcaacctgataac
agtgtgtttctagagctgattcctattttccccaagtctcatgcttcacagattcttgga
tttaagtttcaatattatcagcgcatggatgtcagctgccctgttccctttgggctctat
aagctcacagcgttgctggtgaaacaagattttattgatattgatagcatatatgcacat
ctacttccgaaggatgaagaagcatttgagcattataacactttctcttccaagcggctt
gatgaggctaacaaaattggaagaataaaccttgctgctactggaaaagatctaatggat
gatgagaaaccgggtgacgtcgcaatagatctttttgctgctatagacatggaaactgat
gcaattgaagagcgaaagtctgagcttcaaaacagtcaaactttggggttgcttaccggc
tttctttcggtggatgactggtatcatgcacatatgctgtttggtcgtctgtcaccactc
aatgcagtggaacatatccaaatatgtgagagtttgtttaggctcattgagaggacaatt
tcttcagcatatgatgttattcggcacgcacatcatcaaaactctggatcatccacagga
gttagtactgatcctatggatgtagataactcctcaagacgaagttctttcatagatctt
ccgaaggagctttttcagatgcttgcttgtactggaccctacctttaccgtgactctata
ttgttgcagaaggtttgtagggtgctgagaggttattacttttctgcccttgagcttgtt
agtcatggcgacagtgccttgaattctcaatttcctggaattggaaatcctcatctacac
ctgaaagatgcaaggctaagggtggaggatgctttaggagcttgcctactaccttctttg
caactgattcctgccaatccagctgttggccaggaaatttgggaactaatgagtctcctt
ccttatgaggtgcgatatcgtttatacggtgaatgggagaaagatgatgagcgcatacct
atgctcctagcagcaagacaaacagccaagttggacactagacgcattttaaaacggttg
gcaaaggagaatttgaagcagctaggtcgaatggtcgcaaaactagctcatgctaaccct
atgactgtcctacgaacaattgttcatcagattgaggcatacagagacatgattactcct
gtagtggatgcatttaagtatttgactcagctagagtatgacattttggaatatgttgtg
attgagcgcttggcacttggtggacgtgataagctaaaagatgatggtctaaatttgtca
gattggcttcaatcactagcttcattttggggtcacctgtgtaagaagtacccttcaatg
gaattgcgaggccttttccagtatctagtgaaccagttaaaaaaggggcaaggaattgag
cttgttctattgcaggaacttattcaacaaatggcaaacgtccagtacacagagaacttg
actgaggagcagctggatgccatggcagggagtgacactcttcgatatcaagcaacttct
tttggagtaactcgaaataataaggcattgttaaagtctactagcagacttagagatgca
ttacttcccaaagatgaaccgaagttggcgatccccctcctattgcttattgctcaacat
cgttctctgattgtcatcaatgcagatgcaccatacattaagatggttagtgagcaattt
gatagatcccatggaactcttcttcaatatgtggaatttctttgcagtgcagttactcca
gcatcaaattatgctgcactcattccatcgcttaatgacctggtccacctttaccacctg
gaccctgaggttgctttcttgatatatcgccctgtgatgagacttttcaagtctcagagg
agtcctgatgtttgctggccgttggatgataataatgctgcaaatgatgcatctacagaa
tctgatcttgtagatcattctggcagtatggttctagatcttggctctgctcgaaatcct
ataagatgccattccatctggcaaacctaagtctagaagtctgttaaaaccatgctgcct
tcaaaagcgtggaatagcctttctcctgatctttatgcaacattttggggcctcacacta
tatgatttgtacgttccaaaaagtcgctacgagtctgaaatagccaagctgcatgctagt
cttaagtctttggaggagctgtctgacaattcaagctcagcaatcaccaagaggaagaag
gaaaaggaaagaattcaagaatcacttgaccgtctgattagtgaacttcataaacatgaa
gagaatgttgcatcagttcataggcggctttctcacgaaaaggacaaatggttaagttcc
tgtcctgacactttgaagatcaatatggagtttcttcagcgttgtatatttccacgctgc
acattcagtatgccagatgctgtttattgtgctatgtttgtgcacacacttcattcgctc
ggaaccccctttttcaataccgtcaaccatatagatgtcctgatttgtaagactctacaa
cctatgatatgttgctgcacagaatatgaggcaggcaggcttggtaggtttctgtatgag
actttgaagattgcttactattggaagagtgatgaatctatttatgaacgtgagtgtgga
aacatgcctggctttgctgtttattatagatatccaaacagccagcgagttacatatggc
cagtttatcaaggtacactggaagtggagtcagagaataaccagactattaattcagtgt
ttggaatctagtgagtacatggaaattagaaattctctcattatgttgacaaagatttct
ggagttttccctgttactcggaagagtgggataaaccttgaaaaacgggtggctaagatt
aaaagtgatgaaagagaggatcttaaggtgctggcaactggtgttgctgctgcattagct
gctaggaagccttcatgggttactgatgaagaattcggtatgggatatcttgagttgaag
cctgcgccatctattagtaaatcttctgctggaaattcagcatctgtacaaagtgggata
agtcttggtgtttctcaaactgaatctggcagtggaaaacatctggactcagtaaacaca
gtcaaagaccagacaaaaataaaaactgcagacagcaaggtagaaagaactgacagcaca
atagctggaaaatctgattctggccaagcaaaactcaagggtaattcatcattaaatgga
ttggatgctccatcaaccttaccctcacctgctgtacaatctggagcaacaaaatccatg
gaaaaccaaaagcaagcagaagaatctgtaagtagagcatcggaagaacatgttccgaga
gctgcagagtcaagagcttccgggaaacgttcggcacctgctagctcacactcaaagccc
tcgaaacaagatcctgcaaaagaggatactagatctggtaaagctgttgccagagcgtct
ggttctttgagcagtgacaaggatatacaaaaccatgcatcagagggaagacacactgga
agtactaatttatcttcttcagtcaatgctaatggtaacagtatttcagcttctgcaaaa
atctcagctccatctactaagggtgagaccggtagtgagctcaaggctgagatgggtggc
gtaaagtcttctgatattagggcttctgtggtgaaggatgatggaaatgatgttattgac
tcggtaagaggttcctcttcacgtgtagttcattctcctaggcatgacaatacaattgtt
acttcaaagtctactgataaagcccagaagagagctagttctgctgaagaacctgataga
cttggtaaacggcgtaaagcggaggcggagcaaagagatgtcgagaatgaaatcagatta
tctgaaagagagaagcttgtagatcctcgattatctgatgagaaattggggccggaagaa
cttggtttgtacagggcaggggataagccattggaaagggcaaaagacaaaggaaatgaa
aggtatgaaagagagcacagggagagattggaccgtgtggataagtctcgtggagatgac
ttcattgtggagaaacctagggataggtcaatcgaaagatatggaagagaacgatctgtt
gagagaatgcaagaaaggggtagtgaaaggggtttcaatagactccctgagaaggctaag
gatgatagaagcaaggatgatagaagtaaattacgatacaatgatgtatctatagaaaaa
tctcatgcagatgatcgcttccatgggcaaagcctgcctccaccacccccattacctcca
aatatggttcctcaatctgttggtggtggtaggcgtgatgaagatgctgataggaggtac
ggagccactagacattctcaaaggctttctccaaggcatgaagaaaaagaacggagacgg
tctgaagaggctgtggtttcccaggatgatgcaaaacgcagaaaagaagatgattttcga
gataggaaacgcgaggaacgagaagcattatcattgaaggttgaagagagggatagagag
agagagcgggatagagaaaaaacaaatcttctaaaggaagagttggatttaaatgctgca
tccaagagacgtaagctcaagagggagcatctgccagctggtgaacctggggagtactca
ccagtggctcctccacctccacccctaggaattggtgtttcacaagcttatgatggaaga
gacagggtagacaggaagggacccatgatccaacatgcaaattacatagatgaaccaggt
ctcagaattcatggtaaagaggtagccagcaagctgaatcgtcgtgattctgatccaatg
tatgatcgagaatgggatgatgagaagaggcaaagagctgatcagaaacggcggcaccga
aaataa
DBGET
integrated database retrieval system
