Arachis ipaensis: 107638231
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Entry
107638231 CDS
T04301
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
aip
Arachis ipaensis
Pathway
aip03440
Homologous recombination
aip03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107638231
03450 Non-homologous end-joining
107638231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aip03032
]
107638231
03400 DNA repair and recombination proteins [BR:
aip03400
]
107638231
DNA replication proteins [BR:
aip03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107638231
DNA repair and recombination proteins [BR:
aip03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107638231
BRCA1-C complex
107638231
NHEJ (non-homologous end-joining)
MRX complex
107638231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
AAA_16
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
107638231
NCBI-ProteinID:
XP_016196875
LinkDB
All DBs
Position
B04:complement(2737508..2752798)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHNGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQEKTESLKC
QLQELEGSIKDVDDKIHHAEKTLKDLRKLQDQISTKTAQRSTLFREQQKQYAALTEDNED
TDEELMEWKTKFEERIGFLQTKISKLERDLNDIDTKSSFLKQTINDSIWEISKLQTEAEA
HMSLKNERDLCIKNLFAKHNLGPLPESPFTDEVATNLTNRVKSRALDLEKDLQDKKKAND
NKLKMAWDCYMNANDRWKNTEAQKKAKSEIKNGIVRRIEEKENERDSLELQISNVNISHI
DERERNLRIDVERKTNQLAEREFEVNIRQKQSEVYSIEQKIKAVNREKDIMVADSEDRVK
LSFKKAELENHKKKHRKIVDDQKDKIKMVLKGRVPADKDLMKEVSQALRTLGSEYDNQNA
SCNAVKMEVTKLETKETEIKNNLQKHKKDLESKKRRIETELQSLDPQWSCVDSYPKMLES
FKEKRDFTISKYKGNEGIQNSLDHFAKEARTKHACPCCDRAFSAEEEDEFVKKQRSRVAN
SAKVIKALAEESAIADSNYQQLDILRVVYEEYVKLNEETIPDAESKLQQINEELDCKSQE
LDDMLGVLAQIQSDRDVAKALMQHIENADRHFQETIALQKQVEDLEYKLDFRGQGVRTME
EIQLELKSLQGTKDNLHAELEKLREEQRYAENDLSSIQIRWHTLREEKVKAANTLQDAKR
VEEELARLTEEKTNVDLDEKHLAEALRPLSKERDKLLADHDELQVRLNRDYQYLVEQKRI
YQQEAESLFKMTSKIREYSDLKKGDRLKELQEKKSLSESELKSCDARKQAILADINKSKD
LLRDQDNIKRNIEDHLNYRKTKAEVDELGREIETLEESILKVGGVSAIESELQKLSKERE
TLLSELNRYHGTMSVYQSNISKNKIDLKQSQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVSKDDLQHSIIECQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgttgataagatgctcatcaaaggcattcggagcttcgacccagagaacaag
aatgtcatcaccttcttcagacccttaaccctaatcgttggccccaacggtgctggaaaa
accacaatcatcgagtgcttgaagctttcttgcaccggcgagttgcctcctaatgcaagg
tctggtcacagcttcattcatgaccccaaggttgctggtgaaactgaaacgaagggccag
attaagctccgatttaagacagcagcgggaaaagacgtggtttgcataaggtcctttcag
ctcacacaaaaggcgtcgaagatggaatacaaggcaattgagagtgtacttcaaactatt
aatcctcataatggggagaaagtttgccttagctatagatgtgcagacatggataaggaa
attcctgcgctcatgggtgtttctaaggccattttagaaaatgttatatttgttcatcaa
gatgaagcgaattggccactgcaggatccttccacattgaagaaaaagtttgacgacatc
ttttctgcaactcgatatacaaaggcactggaggttataaagaaacttcacaaggaacaa
gcacaagagataaagactttcaagcttaagcttgagaatcttcaaacattgaaagatgca
gcctataagcttcgtgaaagcattgcccaagaccaggagaaaacagaatctctaaaatgt
cagttacaggagttggaaggaagcattaaagatgtggatgataaaatacatcatgcagag
aaaacactgaaagatttgcgaaagctgcaggaccaaatctcaactaaaactgctcaacga
agcactctgtttagggaacaacagaaacaatatgcagctcttaccgaggataatgaagac
actgatgaagagttgatggaatggaagacaaagtttgaagaaaggattggatttttacaa
acaaaaataagcaaattggagagagacttgaatgacattgacactaaaagttctttcctt
aagcagactatcaatgattccatctgggagatcagcaagcttcaaactgaagctgaagct
cacatgtctttgaagaatgaacgtgatttgtgtattaaaaatctttttgcgaagcataat
ttagggcctcttccagagtcacccttcactgatgaggttgctaccaacctgaccaatcgt
gtaaaatcaagggctttagatcttgagaaggacctccaagataaaaagaaagcaaatgat
aataaactcaagatggcatgggactgctacatgaatgccaatgaccgatggaaaaatacc
gaggctcaaaaaaaagctaaatcagagatcaagaatggcattgttagacgcattgaggaa
aaagaaaatgagcgtgattcactcgaacttcaaatttccaatgtaaacatttctcacatt
gatgaaagagaaagaaatttgcgaatagatgtcgagaggaagacaaaccaactagctgaa
agagaatttgaagtaaatatacgtcaaaagcaaagtgaggtatatagtattgaacaaaag
attaaggctgtcaatcgggagaaggatatcatggttgctgattcagaggacagagtgaag
ctatcttttaagaaagcagagttggagaatcacaagaagaaacatagaaagatagtagat
gaccaaaaggataaaataaaaatggtgctaaaagggagggtccctgctgataaggatctg
atgaaggaagtttctcaagcattaaggactcttggtagtgaatatgataatcaaaatgca
agttgcaatgcggtcaaaatggaagttaccaagttggagacaaaagaaacggaaattaaa
aataatctgcagaaacacaagaaggatttggaatcaaaaaagagacgtattgaaaccgag
cttcagtctttggatcctcagtggtcttgtgttgattcttatcccaaaatgttagagtct
tttaaggagaagagagatttcacaataagcaagtataaaggtaatgaaggtatccaaaac
tcacttgatcattttgcaaaggaagccagaactaagcatgcttgcccttgctgtgaccgc
gccttctctgcagaagaagaagacgagtttgtgaagaagcaaagatcaagggttgctaat
tcagctaaagttattaaagctcttgctgaggagtctgcaattgcagactctaactatcag
cagttggacatccttcgtgtagtttatgaagaatatgtcaaacttaacgaggagacaatc
cctgatgctgaaagtaaacttcagcaaattaatgaggagctggattgcaaatctcaggaa
ctggatgatatgttaggtgttttagcacaaatacagagtgacagagatgtggccaaagca
ttgatgcaacatattgaaaacgctgaccggcattttcaagaaactattgctttgcagaag
caagtagaggatttagaatataagcttgattttcggggacaaggagtgaggactatggaa
gaaattcaattggagcttaaatcattgcagggaacaaaggacaatttacatgctgaattg
gagaagctgagggaagaacagagatatgcagagaatgatctatcaagtattcaaattagg
tggcacactcttagggaggagaaagtcaaagcagctaacacattgcaagatgctaaaagg
gtagaagaagaattagcacgtctgactgaagaaaagaccaatgttgatcttgatgaaaag
catttagcagaagctcttcgacccttatccaaggagagagataaattacttgctgaccat
gatgaactgcaagttagacttaatcgtgattatcagtaccttgttgaacaaaagagaatt
tatcagcaagaagctgaatcactttttaaaatgacttctaaaattagagagtactcagat
ttaaagaaaggggacaggttaaaggaactgcaggaaaagaaatctctatcagagtctgaa
cttaaaagttgtgatgctaggaagcaagcaattttagctgatattaacaaaagcaaagat
ttgttgcgagatcaagataatataaaaagaaatatcgaggaccacttaaattaccggaaa
acaaaggctgaagtagatgagctaggacgtgaaattgaaacactcgaagaaagtatattg
aaggttggtggtgtgtccgcaattgaaagtgaactacagaaattatcaaaggagagagag
acgcttctttcagagttaaacaggtaccatggaacaatgtctgtttaccaaagcaatatt
tccaaaaataagattgatcttaagcagtctcaatacaaggacatagataagcgatacttt
gatcaacttatacagcttaagacaactgaaatggcgaacaaggacctggacagatactac
aatgcacttgataaagcattgatgcgcttccactcaatgaaaatggaagaaatcaacaaa
attataagggaattgtggcaacaaacctatagaggacaggatatagactacattagtatt
cattcagattctgaaggtgctgggacccgttcctacagttacaaggttctcatgcagact
ggtgatgccgagctagaaatgagaggaagatgtagtgcgggccagaaggtccttgcatct
cttatcattcgcttggcgttagctgaaactttttgcctcaattgtggaatattggcactg
gacgagccaaccacaaatttggatggccccaatgctgaaagtctggctgctgctctccta
aggatcatggaagacaggaaaggccaggaaaattttcagctaatcgtaattactcatgat
gagcgttttgctcaactgattggtcagcgccagcatgcagagaaatattatcgagtctca
aaagatgatcttcagcacagtataattgaatgccaggagatatttgactga
DBGET
integrated database retrieval system
