Arachis ipaensis: 107638239
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Entry
107638239 CDS
T04301
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107638239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107638239
03012 Translation factors [BR:
aip03012
]
107638239
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107638239
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107638239
Translation factors [BR:
aip03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107638239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
107638239
NCBI-ProteinID:
XP_016196900
LinkDB
All DBs
Position
B04:2587343..2601211
Genome browser
AA seq
1132 aa
AA seq
DB search
MHTFLIARLRCLHLPKNHLSVPYTFKLRFQRFISTRLFSRYAFEQFSDDEYDCDFENHHA
SSTVVNVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVA
SKVPLPNYRPDLDDKRPQREVVVPLSLQRRVEGLLQEHLDRLHLNSEKAIGKGDYVTPPG
QDKDIDLDENADSFVDGSVMEKVLQKRSLRMRNMQRSWQDSPEGKRMLEFRKSLPAFKEK
EGLLQAIARNQVIVISGETGCGKTTQIPQYVLESEIESGRGAFCSIICTQPRRISAMAVS
ERVSSERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEI
HERGMNEDFLLIVLKDLLPRRPDLRLVLMSATLNAELFSNYFGSAPTFHIPGFTYPVRAH
FLEDVLEMTGYKLNSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDALSKSSFESYS
SRARDSLAAWAPDCIGFNLIEAVLCHICRKERPGGVLVFMTGWEDISCLRDQLKAHPLLG
DPNRILLLTCHGSMATSEQKIIFERPPPNVRKVILATNMAEASITINDVVFVIDCGKAKE
TTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSEYQLPELLRT
PLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKESLTHLGKFLS
MLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYS
DHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFNFILKEAGLVDTDAS
LNNKLSHNQALVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPY
PWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPNLSD
CYLKMKEELNKLIQKKLDDPSIDIHKEGKYLMLAVQELVTGDQCEGRFVFGRESRKPKPS
SDENRFTKDGTNPKSLLQTLLMRAGHSPPTYKTKHLKTNEFRALVEFKGMQFVGKPKRNK
QLAERDAAIEALAWLTHTSDNYQQEDDNSPPDVTDNMLKLLGKRRKSKRRSG
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcatacttttctcatagcacgtctgaggtgcctccatcttcccaaaaatcacctttct
gttccttacactttcaaactcagattccaacgtttcatttcaacgcgcctcttctctcgt
tatgcattcgagcagttctccgacgatgaatatgactgcgatttcgagaaccaccacgca
tcgtccacagtggtcaacgtggatgaatggaaatggaaactcagcatgctgttacgcagc
gaaaaggaccaggagattgtatctagagacagaaaagacaggagagactatgaacagata
gctaatcttgccaaacgaatgggactttacagtgagttgtttgggaaagtggttgttgca
agcaaggtgcctcttcctaactaccgaccagatttggatgacaaacgtccacaaagggag
gtggtggttccactaagcttgcaaagaagggttgagggtttgttgcaggagcaccttgat
agacttcatttgaattctgaaaaggcaattggcaagggggattatgttacaccccctggt
caggataaagatatagatttggatgaaaatgctgattcatttgtggatggatctgttatg
gaaaaggttctccagaagaggagtttaaggatgcgtaatatgcaaagatcttggcaggac
tcacctgaaggaaagaggatgctggaattccggaagtctcttccagcattcaaagagaag
gaaggtttacttcaagctatagctcggaatcaggtgatagtaatatctggagagactggc
tgtggtaaaactactcaaattcctcagtatgtattagagtcagagatagagtctggccgt
ggagcattttgcagcattatttgcacacaacctcgaaggatatctgccatggctgtatct
gagagagtgtcatctgagagaggcgagcctctcggtgaaacagttggtttcaaagttcga
ttagaaggaatgaaaggaaaaaacacccatttgctcttttgtaccagtggtatattactt
cgaaggctgctgagtgatcgaaacctgaacggtataacacatgtttttgttgatgaaatt
catgagcgaggcatgaatgaagacttcttactgattgtgttgaaggatcttcttccacgt
cgtccagatttaagattggttctaatgagtgctaccttgaatgctgagcttttttctaat
tattttggaagtgcaccaacgtttcatattccgggcttcacctatcctgtgagagctcac
ttcttagaagatgttttggaaatgactgggtataagttgaattctttcaaccaaatcgat
gattatggtcaggagaaaatgtggaaaacacaaaagcagctagcaccgcgaaaaaggaaa
aatcagatcactgcccttgttgaggacgcactttctaaatcgagttttgagagctacagt
tccagggcacgtgattcactagcagcgtgggcacctgattgcattggatttaatcttatt
gaggccgttctgtgccatatttgtcgtaaggagcgaccgggtggtgttttagtgtttatg
actggatgggaggatataagctgtttaagagatcagcttaaagcacatcctctcttagga
gatccgaataggattctgcttctaacatgtcatggttcaatggcaacttccgaacagaaa
atcatatttgagagaccacctcctaatgtaaggaaagtaatacttgccacaaatatggct
gaagcaagtattacaatcaatgacgtagtatttgtaattgactgtggaaaagcaaaagag
accacatatgatgctttgaataacaccccatgtctactaccttcttggatttcacaagca
tctgctcgtcagagaaggggtagggctggtcgtgtgcagccaggagagtgctatcacctt
taccctagatgtgtttatgaagctttttctgaatatcaacttcctgagctgctcagaaca
cccttaaattcgctttgtttacaaataaaaagtttgcaggttgagagcataggggagttc
ttgtcggcagctttgcaggcaccagagccacgggctgtccaaaatgctattgattttctc
aagatgattggagcattagacgaaaaagaaagtcttacccacctcgggaagtttctctct
atgcttccagtagatcccaagctagggaaaatgttaataatgggagctatatttcgttgc
tttgatcctgttcttacgatagttgctggccttagtgtcagggacccattccttttgccc
caagacaagagagatttagccggaacagcaaagtctaggttttctgctaaggattatagc
gatcatatggctcttgttcgagcatatgaaggatggaaagatgcagaaagagaagggtct
gcttatgaatactgctggagaaatttcctctctgcccaaacccttcaggctatccattca
cttaggaagcagtttaacttcattttgaaagaagctggcttggtagacacagatgctagc
ctcaacaacaaattgagtcacaatcaagctcttgtgcgtgcagtcatttgttctggactc
tttcctgggatagcatcagtagtgcatagggagacatccatgtcatttaaaacaatggac
gatggccaggttttattatacgcaaattcagtgaatgcacgttaccagaccattccttac
ccatggctggtttttggtgaaaaggtgaaggtcaatgctgtcttcatccgtgactccacc
ggtgtatctgactcaatactcatcctctttggtggcgctctaagtaatgggatacaggct
gggcatctgaaaatgttggatgggtatgtcgacttcttcatggatcctaatttatctgat
tgctatttgaagatgaaggaagagcttaataagcttatccaaaagaagcttgatgatcct
agcattgacattcacaaggaaggaaagtatttaatgcttgcagttcaggaactggttaca
ggggatcaatgtgaaggaagatttgtatttggccgtgaaagcaggaagcccaagccctct
agcgacgagaatagatttacaaaagatggtacgaaccccaagagcttgttgcaaacactg
ttgatgcgagcgggtcactcgccacctacatacaaaacaaaacatttaaagacaaatgaa
tttagagcattggtggagtttaaaggcatgcaatttgttggcaaaccaaagagaaacaag
cagcttgcagaaagagatgctgctatagaggcattggcttggctgactcacacctctgac
aattatcaacaagaagatgataactctcctcctgatgtcaccgacaacatgctgaaactc
ttggggaaacgtagaaaatcaaaacgacgctctggttga
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integrated database retrieval system
