Arachis ipaensis: 107638503
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Entry
107638503 CDS
T04301
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
aip
Arachis ipaensis
Pathway
aip03013
Nucleocytoplasmic transport
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107638503
03015 mRNA surveillance pathway
107638503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107638503
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107638503
mRNA cycle factors
P-body specific factors
107638503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107638503
NCBI-ProteinID:
XP_016197298
LinkDB
All DBs
Position
B04
Genome browser
AA seq
472 aa
AA seq
DB search
MKGALDRTKVVLRHLPPTISEAALLDQIDGTFAGRYNWVSFRPGKISQKHMSYSRAYVDF
KKPEDVIEFAEFFNGHIFVNEKGAQFKVMVEYAPSQRVPRQWSKKDGRDGSIYKDSEYLE
FLELLAKPVENLPSAEIQLEKREAERSGAAKDNPVITPLMDFVRQKRAAKGPRRSLSNGK
VSRRAGTSSNGSSCSASSRRGSGKKRISTTMYVARDTGKGSIGKDKTIYTLVPRQGDQHH
SSKTSTVASSDANQTLDENVAGNTGSGKKVLLLKGKEREIINGSDLDSLIEQNNVTSSAK
TIVGSTPLKQNQRHEGSARIIRSILSNKEMRQSQSARPQSEQTIPTSDLQKERQPPRPVH
VQLILKGSNGTPENRIGMHDSRNSSERLEKRVRHKDRPDRGVWTNRSIGGDDSLSLSASS
QVDHLEGRCFIMFTMISMTGLLKSMFYEIELYIWHLFGVKLMIFVKDFASDM
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtgcgttggatcggacgaaggtggtgctgcggcacttgcctcctacgatttct
gaggccgcacttttggaccaaattgacggcaccttcgctggccgctacaattgggtctcc
tttcgtcccggaaaaatcagccagaagcatatgtcctattccagagcttacgttgacttc
aaaaagccagaggacgttatagagtttgctgagttctttaacggccacatctttgtaaat
gaaaagggagcacagttcaaagtcatggttgaatatgctccttcacaacgtgttcctaga
cagtggtctaaaaaggatggccgcgatgggtccatatacaaagattctgagtatctggag
tttcttgaacttcttgccaagcctgttgagaatcttcccagtgctgagatacagttggag
aaaagggaagcagaacgatcaggtgctgcaaaagataatcctgtaattacaccattgatg
gactttgtgcgtcagaaaagagctgccaagggacctcggagatcactttctaatggaaaa
gtgagtagaagagctggcacatcatcaaatgggagtagttgttctgcctcgtcaagacga
ggttctggaaagaagaggatttccaccacaatgtatgttgcaagagacacagggaaaggt
tccattggaaaagacaaaacaatttacactttggttcccaggcaaggtgatcagcatcat
tcaagtaaaacttcaactgtggcttcatcagatgcaaaccaaacactggatgagaatgtt
gctggaaatactggttccgggaagaaggtcctgcttcttaaagggaaggaaagagagata
attaatgggtctgatttagatagtttaatagagcagaataatgtaacatcttcagccaaa
acaattgttggctcaacacctctgaagcagaatcagaggcatgaaggtagtgcaaggatt
attagaagcatactctcaaacaaggaaatgcgccaaagtcagtcagccaggcctcaatcg
gagcagacaataccaacatctgatctacaaaaagaaagacaaccacctcgccctgtacat
gtgcaattgattttaaagggttctaatgggacaccagagaataggattggcatgcatgat
tcacgtaattcaagtgagaggctggagaaacgtgttaggcataaggatagacctgatcgt
ggtgtatggacaaatcgttccattggaggcgatgattctttatcattgtctgcttcctca
caagtagaccatttggaaggtagatgcttcattatgtttactatgatttcaatgacaggt
cttctgaaaagcatgttttatgagatagaactgtacatttggcatctatttggtgtaaag
ctcatgatctttgtaaaggactttgcctcagacatgtag
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