Arachis ipaensis: 107638825
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Entry
107638825 CDS
T04301
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107638825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107638825
03019 Messenger RNA biogenesis [BR:
aip03019
]
107638825
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107638825
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107638825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_3
CR_prot_dom_plant
Torus
Motif
Other DBs
NCBI-GeneID:
107638825
NCBI-ProteinID:
XP_016197709
LinkDB
All DBs
Position
B04:9715477..9722941
Genome browser
AA seq
696 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPPAAATVSAPSAGLLSNQNDPTAAAAAAAVPNGAAAAAPTA
GDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPSVDEVLQKIQHLYSYNYNAS
NKFFQQRGSNYNQQAEKSQFPQGNNSTNQAVAGKPLQAESGNVQQQQVQQAQQPVNQSQV
QNVASGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFD
SVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELS
FHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEE
KAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAVQGRGRGRGMMWPPHM
PLARGARPMPGMPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAG
PPAAMMFRGRPSQPGMFPGGGFGMMMNPARPPFMGGMGANPPRASRPVNMPPMFPPPPPP
PQNNNRLVKRDQRINDRNDKFGSGLEQGKNQDMMSQSGGPDEDMQGYKAQQDDQYAVNTF
RNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacgctgctccc
cccgctgccgccaccgtctccgcaccctccgccggacttctctccaatcaaaacgatcca
accgcggcggccgctgcagccgcggttcccaatggcgctgccgcagctgcgcccactgct
ggagaccccggagctgccgggaatgtgcccgggaggcggagcttccggcagacagtgtgc
cggcactggctaaggagcttgtgtatgaagggagacgcgtgcgggttcttgcatcagtac
gacaaggcgaggatgccggtgtgccggttctttcggctgtacggtgagtgccgcgagcag
gattgcgtgtacaagcacaccaacgaagatatcaaggagtgtaacatgtacaagttagga
ttttgtcctaatgggcctgattgccgatacagacatgcaaaatctgctggacctccacct
tctgttgatgaggtccttcaaaagatccagcatttatattcttacaactacaatgcatct
aacaagtttttccaacaaaggggttcaaactataatcaacaagctgaaaaatctcaattt
cctcaaggaaataattctacaaaccaagctgttgctggaaaaccattacaagcagagtcg
ggtaatgtccagcagcaacaagttcaacaggctcagcagccagtcaatcaaagccaagtg
caaaatgttgctagtggtcagcccaatcaggcgaataaaactgcaactcctttacctcaa
ggaatatctaggtattttattgttaaaagttgcaatcgtgaaaatttggagttatcagta
caacaaggagtatgggcaacacaaaggagcaacgagtcaaaactaaatgaggcttttgat
tctgtggaaaatgttatactgattttctcagtcaaccgaactcgccatttccagggttgt
gcaaagatgacctccagaattggtggttctgttgctgggggaaactggaaatatgctcat
ggaactgcacattatggacggaatttctctgttaaatggttaaagttatgtgaactgtca
ttccacaaaactcgccatttgaggaatccatacaatgaaaatttaccagtgaagataagt
agagattgtcaggagctggaaccctccatcggtgagcagttggcatccttgctttatctt
gagccagatagtgagcttatggctatctcaattgcagcagagtctaaacgagaagaagag
aaggcaaagggagtgaatccagacaatggaggagagaatccggatattgtcccatttgaa
gacaacgaagaagaggaagaggaagaaagtgatgaagaggaggagagctttggtcatgtt
gttgggccagctgttcaaggcagaggtaggggcagaggcatgatgtggccgcctcacatg
cctcttgcacgcggagccagacctatgcctggaatgccaggttttaacccagtaatgatg
ggtgatggattatcatatgggcctgttggacctgatggcttcggtatgcccgatcttttt
ggtgtgggccctcgtggttttcctccatatggtcctaggttctctggtgattttgcagga
ccccctgcagccatgatgttccgtgggcgaccttcccaacctgggatgtttccaggtggt
ggatttgggatgatgatgaatcctgcacgtcctccctttatgggggggatgggtgcaaat
cctccaagagccagtaggccagttaatatgcctccgatgtttccaccgcctccacctcca
cctcaaaataacaaccgacttgtaaagagggatcaaagaattaatgatcggaatgataaa
tttggttcaggattagagcagggcaagaatcaggatatgatgagtcaaagtggtggacct
gatgaagacatgcaaggatacaaagcacagcaggatgatcagtatgctgtcaacaccttc
aggaacgatgatagtgaaagcgaggatgaggcacctcggcggtcaaggcatggagagggg
aaaaagagaaggcgaagcttagaagatgccaatgcaagctctaatcactag
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