Arachis ipaensis: 107639120
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Entry
107639120 CDS
T04301
Name
(RefSeq) eukaryotic initiation factor 4A-3 isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
aip
Arachis ipaensis
Pathway
aip03013
Nucleocytoplasmic transport
aip03015
mRNA surveillance pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107639120
09122 Translation
03013 Nucleocytoplasmic transport
107639120
03015 mRNA surveillance pathway
107639120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107639120
03041 Spliceosome [BR:
aip03041
]
107639120
03009 Ribosome biogenesis [BR:
aip03009
]
107639120
03012 Translation factors [BR:
aip03012
]
107639120
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107639120
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107639120
mRNA cycle factors
Stress granule specific factors
107639120
Spliceosome [BR:
aip03041
]
Complex C
Other components
EJC/TREX
107639120
Ribosome biogenesis [BR:
aip03009
]
Eukaryotic type
90S particles
Helicases
107639120
Translation factors [BR:
aip03012
]
Eukaryotic type
Initiation factors
eIF-4
107639120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
CMS1
Motif
Other DBs
NCBI-GeneID:
107639120
NCBI-ProteinID:
XP_016198029
LinkDB
All DBs
Position
B04:complement(21629548..21634064)
Genome browser
AA seq
406 aa
AA seq
DB search
MATTSVVPANRRRAANAAEELEFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQ
QRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQFVDTSKREVQALILSPTRELASQTEKV
ILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRDIKMLV
LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVS
AMHGDMPQRERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacgtcggtggtgccggccaaccggcggcgtgcggcgaacgctgcggaggag
ctggagttcgagacgacggagggggtaaaggcgatagcgagcttcgaggagatgggaata
aaggacgatctgctcagagggatctaccagtacggattcgagaaaccctccgcaatccaa
cagcgtgccgtgacgccaatcatacagggccgtgacgtcatcgctcaggctcaatctgga
accggcaagacctccatgattgcactcaccgtttgccagttcgttgatacctccaagaga
gaagtccaggccttaatattgtctccaacaagggaactggcctcacagactgaaaaggtt
atattggctattggggatttcataaacatacaagcacatgcttgcattgggggtaaaagt
gtgggagaagatataaggaagcttgagtatggagttcacgtggtgtcgggaactcctggt
cgtgtctgtgacatgatcaagaggagaacattgcgtacaagagatataaagatgctagtt
cttgatgaatctgatgaaatgttgagcagagggtttaaagatcagatttatgatgtgtat
agatatctccccccagatcttcaggttgtcttgatttctgctacccttcctcatgaaata
ctggaaatgacaaacaagttcatgacagatcctataaggattcttgtaaaacgtgatgag
ttgacattagagggcatcaagcaattttttgttgccgttgaaagggaagaatggaaattt
gataccctgtgtgatctttatgatacactcactattactcaagctgttatattctgcaac
actaagcgaaaggtggattggttaactgagaaaatgcgtaacaataatttcaccgtctca
gcaatgcatggcgacatgccacagagagaaagagatgcaatcatggcagagtttcgctct
ggtacaactcgtgtactaataacaacagatgtttgggctcgtggccttgatgtgcagcag
gtttctctagttatcaactatgaccttccaaataatcgagagctctacattcatcgaatt
ggccgatctggacgatttggacgcaagggtgttgcaataaattttgtcaaaagtgatgac
atcaagatcttgagagatattgagcaatattacagtactcagatagatgaaatgccaatg
aatgttgctgatcttatataa
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