Arachis ipaensis: 107644850
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Entry
107644850 CDS
T04301
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107644850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107644850
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107644850
U7-dependent histone pre-mRNA processing factors
107644850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
BPS
Motif
Other DBs
NCBI-GeneID:
107644850
NCBI-ProteinID:
XP_016204276
LinkDB
All DBs
Position
B05:complement(147347708..147354396)
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AA seq
740 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLHPLSKVAPTIDAVLL
SHPDTLHLGALPYAMKQLGLAAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID
SAFQSVTKLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRRE
RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPIDTAG
RVLELILILESYWADENLTYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFL
LKYVTLLINKAELDNAPDGPKVVLASMASLETGFSHDIFVEWASDMKNLVLFTERGQYAT
LARMLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLMKEEELKASQG
PDNNVSDPMVVDASNDHLSAEAAGPRGGGYRDILIDGFVPPSTSVAPMFPCYENTSEWDD
FGEVINPDDYVIKDEDMDQGAMHAGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCS
LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDAEVEKTENEMLALVPVSSQVPPHK
SVLVGDLKLADFKQFLSSKGVQVEFSGGALRCGEYVTLRKVGDTTQKGGSSGTQQIVIEG
PLCEDYYKIREYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttcggtgcaggtaacgccactgtgtggagtgtacaacgagaaccctctctcc
tatttggtctccatcgatggcttcaacttcctcgtcgactgtggctggaatgaccatttt
gacccttccctccttcatcccctctccaaggtagcaccaactattgatgctgtgttgctt
tcacatccggatacccttcaccttggtgccctcccatatgccatgaagcagctcggactt
gctgctccggtattttcgactgagcctgtctatagattgggccttctcaccatgtatgac
cagttcctctcaagaaagcaagtatcagagttcgatctgttcacacttgatgatattgat
tctgcattccaaagtgtaacaaagctaacatactctcaaaatcatcatttctcaggcaag
ggagagggaattgtgattgcacctcacgttgctggacatttgttgggaggcactatatgg
aaaattacaaaggatggtgaggatgtgatatatgctgttgattttaatcatcggagggaa
aggcatttgaatggaactgttctaggttcttttgtgagaccagctgttctaataacagat
gcttacaatgctttgaacaatcagccttacagacgtcaaaaggataaagaatttggtgat
atcttaaagaagactctgagggcaggtggcaatgtattacttcctattgacactgctgga
cgggtgttggaacttattttgattttagaatcgtactgggctgacgaaaacttgacctat
cctatatactttctgacttatgttgcatccagcacaatagattatgtgaagagtttcctt
gagtggatgagtgattccatagcaaagtcctttgaacaaactcgggagaatatatttctt
ctgaagtatgtcacacttctgattaacaaggccgagcttgacaatgctccagatggtcca
aaggttgtcctggcctccatggccagcttggaaactggtttttctcatgatatatttgtt
gagtgggccagcgacatgaaaaatcttgtgctttttactgaaagaggccagtatgcaaca
ctagctcgtatgcttcaggctgatccacctccaaaagccgtcaaagtcactgtgtcaaag
cgggttcctttagttggggacgaactaattgcctatgaagaagagcaaaatagaataaag
aaagaagaagctttaaaagctagtcttatgaaagaagaagaattgaaagcatctcagggg
cctgataataatgttagtgatccaatggttgttgatgctagcaatgatcatctatcagct
gaagctgctggtccacgaggtggaggatacagggacatattaatagatgggtttgttcca
ccttcaacaagcgttgccccaatgtttccctgttatgagaatacatcagagtgggatgat
ttcggtgaagtcataaatccagatgattatgtaataaaggatgaagacatggatcaggga
gcaatgcatgcaggaggtgatataaatggaaaactagatgaaggtgctgcaagtttgata
cttgatacaaagccatcaaaagtcatatctgatgaaaggactgtacaagtcagatgttca
ttagtgtatatggacttcgaaggccggtcagatggaagatccattaaaaatattctttcc
catgtggctcccctaaagcttgttttggtgcatggatcagctgaagctacagaacatctg
aagcagcactgcctgaagcatgtttgtcctcacgtctatgctccacaaattgaagagaca
attgatgttacctctgatttatgtgcttacaaggttcaactatctgagaagttgatgagt
aatgtactcttcaaaaagctgggagaatatgaaatagcttgggttgatgctgaagttgag
aaaacagaaaatgaaatgcttgcactagtccctgtctcttcacaagttcctccccataaa
tctgttcttgttggtgatttgaaattggcagatttcaagcagttcctctcaagcaagggt
gttcaggtggaattttctggtggggctttgcgatgtggagaatatgtaactctccgaaag
gttggcgatacaactcagaagggtggaagttctggtactcagcaaattgttattgaaggt
cctttgtgcgaggattattataaaattcgtgaatatctttattcacaattttatctgctt
tag
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