Azospira inquinata: Azoinq_12940
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Entry
Azoinq_12940 CDS
T07865
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aiq
Azospira inquinata
Pathway
aiq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aiq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Azoinq_12940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aiq03019
]
Azoinq_12940 (rnr)
03016 Transfer RNA biogenesis [BR:
aiq03016
]
Azoinq_12940 (rnr)
Enzymes [BR:
aiq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Azoinq_12940 (rnr)
Messenger RNA biogenesis [BR:
aiq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Azoinq_12940 (rnr)
Transfer RNA biogenesis [BR:
aiq03016
]
Prokaryotic type
tRNA degradation factors
Azoinq_12940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QWT48728
UniProt:
A0A975SLZ6
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Position
2851424..2854105
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AA seq
893 aa
AA seq
DB search
MSTRKLSKVRKSDPYFAREVQKYAIPLPSREYVQMLLADQGKPRSFEQICILLDISAEER
ELFQRRLNAMERAGQLMRNRRGDYILPDKADLIPGKVEGHPDGFGFLCPDDGSDDLFLDT
KQMDKVLHGDRALVRAVGVDRKGRREAVVVEVLERANQEVVGRLYEEHGVYFVVAENRRI
SQDILIPGDKKTRTKAKPGQVVVVDIIEQPSQYSQPIGRVKEVLGNYADAGMEIEIALRK
HDLPFEFSKEALEENKALPDKVKKSDLAGREDLRELSLVTIDGETARDFDDAVYCEKKGR
NWRLVVAIADVSHYVRPGMVLDGEAYERGNSVYFPRRVIPMLPEKLSNGICSLNPDVERL
AMVCDMEITPSGNIKAYRFYRAVFRSHARLTYNQVWSWLSGESQPEKAEHEAVLPHLQDL
YKLFQILVKARKVRGAIDFETVETQMLFNDQGKIANIVPVVRNDAHRLIEECMLAANVCA
SQFLEAHKQPCLYRVHEGPTPEKLETLHSFLGEFGFSLGGGDSPTAKDYAELLARIQGRP
DTQLLQTVMLRSLRQAMYSPDNVGHFGLAYESYTHFTSPIRRYPDLLVHRAIKAVLAKEK
YNPGDWDDIGMHCSATERRADEATRDVENWLKCFYMQGRLGEEFDGTIAGVTGFGVFVAL
DDVYVEGLVHVSELGQDYFHFEPTKHQMLGERTGKRYRLGDRMRVKLVRADLETGRIDFI
LADNPEEEVFSWRQGAKGKTAAVKAGKAAKAAKSAPSAPAAKAAAPVEETILAPAKKAGA
KKSEAPKVAKAAKAGSAAQAPKATAAPRATAPKAGSKKKVGALLTPRSSESVKKEGEVSP
EGADVPVAALAPKAQASGASSKAKESAAGGKKKGTAKAPRKPAGKKAAPAKAS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaagaaagttatcaaaagtaagaaagagcgacccctacttcgcccgggaggta
caaaagtacgcaattcccctcccgtcccgggagtatgtgcaaatgctcctggccgatcag
ggcaagccccgcagcttcgagcagatttgtatcttgctggatatttcggcggaggaacgg
gagctcttccaacgtcgcctgaacgccatggagcgggctggccagctgatgcgcaaccgg
cgcggggattacatcctgccggataaggcggatttgattccgggtaaggtggaaggtcac
ccggatggttttggcttcctttgcccggatgacggcagcgacgacctattcctggacacc
aagcagatggacaaggtgttgcacggggaccgggccctggtgcgggccgtgggggtggat
cggaaaggccgtcgggaggcggtggtggtggaagtgctggagcgggccaaccaggaagtg
gtgggtcggctctatgaggaacacggggtctatttcgtggtggcggaaaaccgccgcatc
agtcaggacatcctgattcccggggataagaagacccgcaccaaggccaagccgggccag
gtggtggtggtggacatcatcgagcagccttcccagtattcccagcccattggccgggtc
aaggaagtgctgggcaactacgccgacgcggggatggaaatcgagatcgccctgcgtaag
cacgacctgcccttcgagttttccaaggaagccctggaagaaaacaaggctttgccggac
aaagtgaaaaaatccgatctggcgggccgggaagatctgcgggaattgtccctggtgacc
atcgacggggaaacggcccgggacttcgatgacgcggtgtattgcgaaaagaaggggcgt
aattggcgcctggtggtggccattgcggacgtctcccattacgtgcggcccggcatggtg
ctggacggggaggcttacgagcggggtaactcggtctatttcccccggcgggtcattccc
atgctgccggaaaagctctccaacggcatttgctccctgaatccggacgtggagcggctg
gccatggtctgcgatatggaaattaccccgagcggcaatatcaaggcttatcgcttctac
cgggcggtgttccgctcccatgcccgcctcacctataaccaggtgtggagctggctgtcc
ggggaaagccagccggaaaaagccgaacatgaggccgttctgccccatctccaggacctc
tacaaacttttccagattctggtcaaagcccgcaaggtgcggggcgccatcgactttgag
acggtggaaacccagatgctcttcaacgatcagggcaaaatcgccaatatcgttcccgtg
gtgcgcaacgacgcccaccggctcatcgaagaatgcatgctggcggccaatgtctgcgcc
tcccagttcctggaggcccacaaacagccctgcctgtaccgggtccacgaagggcctacg
ccggaaaagctggaaaccctgcactccttcctgggggaattcggtttttccctggggggc
ggggattcccccacggctaaggattacgccgaattactggcccgcatccagggccgtccc
gacacccagctgttgcagaccgtcatgctccgctccctgcgtcaggccatgtatagcccg
gataacgtgggccacttcggtctggcctatgagtcctacacccactttacttcccccatc
cgacgctacccggatttgctggtgcaccgggccatcaaggccgtgctggccaaggaaaag
tacaacccgggggattgggacgatatcggcatgcactgctccgccaccgaacggcgggcc
gacgaggccacccgggatgtggaaaactggctcaagtgcttctacatgcagggccgtctg
ggcgaggaatttgacggcaccatcgccggggtcacgggcttcggcgtcttcgtcgccctg
gacgacgtctatgtggaaggcctggtccacgtttccgaactgggccaggactatttccac
ttcgagcccaccaagcaccagatgctgggggaacggaccggcaagcgctaccgtctgggg
gaccggatgcgggtgaaactggtgcgggcggacctggaaaccgggcgcatcgacttcatc
ctggcggataacccggaagaagaggtgttctcctggcggcaaggggccaagggtaaaacg
gcggcggttaaggcaggcaaagccgccaaggctgccaaatcggctccgtccgcccctgcg
gccaaggcagctgctccggtggaggagaccattctggctccggccaaaaaagctggggcc
aaaaagtcggaggctcccaaggtcgctaaggccgccaaagcgggcagtgccgcccaggcg
cccaaggccaccgccgcgccccgggccaccgcgcccaaagccggaagcaaaaagaaggtg
ggagcgctcctgactccccggtcctctgaatcggtgaagaaagagggggaggtttccccg
gaaggggctgacgtcccggtggcggctctggcacccaaggcccaggcctctggggcttct
tccaaggccaaggaaagtgccgcaggggggaagaagaaaggaacggctaaggccccccgc
aagcccgcagggaaaaaagccgctccggccaaagcctcctga
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