Actinomyces israelii: AIF0345_1139
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Entry
AIF0345_1139 CDS
T06659
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
air
Actinomyces israelii
Pathway
air03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
air00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AIF0345_1139 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
air03019
]
AIF0345_1139 (rnj)
Messenger RNA biogenesis [BR:
air03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AIF0345_1139 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WKR21234
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Position
1389627..1391321
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AA seq
564 aa
AA seq
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MRGVTNFPTLKAPGPVPDGAMRIVPLGGLGEVGRNMTVFEVDGELLIVDCGVLFPEEDQP
GVDLILPDFSYIEDRLDDVVALVLTHGHEDHIGGVPYLLRLRDDIPLVGSALTLAFVEAK
LKEHRIRPALRVVAEHEAVSYGPFDLEFVAVNHSIPDAMAVMIRTDAGNALITGDFKIDS
LPIDGRITDLRSFARFGDEGVDLFCVDSTNAEVPGMIGHENQIGPVLDSVFAESDQQIIV
ASFSSHVHRVQQVLDAAALHGRRVALVGRSMVRNMSIAAERGYLKVPDGVLIDAKDVSSL
PPDGRVLMATGSQGEPMAALSRMAHGEHRSITLEPGDTVIFASSLIPGNENSVNRVINQL
MRLGARVVHQGNAKVHVSGHASSEELLHVYNIVGPRNVMPIHGEVRHLVANGALAVKTGI
APESIMLAEDGVVVDLLDGRARIAGAVPCGYVYVDGASVGEIDETELKDRRILAEEGFVS
VYAVVETKTGTILAGPDIQARGMAEDDSVFEDVLPDVTTALQAALDKGNADARSLQQAMR
RALGRWIGRRLRRRPMIVPVVIEA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggcgtgacgaacttcccgacgctcaaggctcccggtccggttcccgacggcgcg
atgcgcatcgtgcccttggggggactgggagaggtcggccgcaacatgaccgtcttcgag
gtcgatggcgagctgctcattgtcgactgcggcgttctgttccccgaggaggaccagccc
ggtgtcgatctcatcctgcccgacttcagctacatcgaggaccgtctcgacgacgtcgtc
gccctggtcctgacccacggccacgaggaccacatcgggggcgtgccctacctgctgcgg
ctgcgcgacgacatcccgctggtcggctccgcgctcaccctcgccttcgtcgaggccaag
ctcaaggagcaccgcatccgccccgccctgcgcgtggtcgccgagcacgaggcggtctcc
tacggccccttcgacctggagttcgtcgccgtcaaccactccattcccgacgccatggcg
gtcatgatccgcaccgacgcgggcaacgcgctgatcaccggggacttcaagatcgactcc
cttcccatcgacgggcgcatcaccgacctgcggtccttcgcgcgcttcggcgacgagggc
gtggacctgttctgcgtggactccaccaacgccgaggtccccggcatgatcggccacgag
aaccagatcggtcccgtgctcgacagcgtcttcgccgagtcggaccagcagatcatcgtg
gcctcgttctccagccacgtccaccgcgtccagcaggtcctggacgccgccgcgctccac
gggcgccgcgtggccctcgtgggccgctcgatggtgcgcaacatgagcatcgcagccgag
cgcggctacctcaaggtccccgacggcgtgctcatcgacgccaaggacgtgtcctccctg
ccccccgacgggcgcgtcctcatggccacagggtcccagggcgagcccatggcggccctg
tcgcgcatggcccacggcgagcaccgcagcatcaccctggagcccggcgacaccgtcatc
ttcgcctcctccctcatcccgggcaacgagaactccgtcaaccgcgtcatcaaccagctc
atgcgcctgggcgcgcgcgtcgtccaccagggcaacgccaaggtccacgtctccggccac
gcctcgagcgaggagctgctgcacgtctacaacattgtggggccccgcaacgtcatgccg
atccacggggaggtccgccacctcgtggccaacggcgccctggccgtcaagaccgggatc
gcccccgagagcattatgctcgccgaggacggcgtcgtcgtcgacctgctcgacgggcgc
gcccgcatcgccggggcggtgccctgcggctacgtctacgtcgacggggcctccgtcggg
gagatcgacgagaccgagctcaaggaccgccgcatcctggcggaggagggcttcgtgtcc
gtctacgccgtcgtcgagaccaagaccggcaccatcctcgccggtccggacatccaggcc
cggggcatggccgaggacgactccgtcttcgaggacgtcctgcccgacgtcaccaccgcg
ctccaggcggccctcgacaagggcaacgccgacgcccgctccctccagcaggccatgcgc
cgcgcgctggggcggtggatcgggcgccgcctgcgccgccggcccatgatcgtgcccgtc
gtcatcgaggcctga
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