Argopecten irradians (bay scallop): 138304639
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Entry
138304639 CDS
T10542
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
airr Argopecten irradians (bay scallop)
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
airr03016
]
138304639
Enzymes [BR:
airr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138304639
Transfer RNA biogenesis [BR:
airr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138304639
Prokaryotic type
tRNA splicing ligases
138304639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Kp4
Motif
Other DBs
NCBI-GeneID:
138304639
NCBI-ProteinID:
XP_069100913
LinkDB
All DBs
Position
12:32749399..32767382
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AA seq
506 aa
AA seq
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MVVRTYQEELGYLEKIGANAWRIKKGFVPNMKVEGIFYANECLEKLMFDELKQSCRSQGY
GGFLPGMKQIGNVAALPGIIGKSIGLPDVHSGYGFAIGNMAAFDMGNPEAVVSPGGVGFD
INCGVRLLRTNLMEKDVQPVKEQLAQCIFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFN
EHAAKKMGIECKGQVCMMIHCGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIN
SQEGQDYLKGMAGAANYAWVNRSSMTFLSRQAFSKMFNSSPDDLDMHVIYDVSHNIAKVE
EHFVEGKQRSLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
GETFGTTCHGAGRALSRAKSRRNLDYTDVLNALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHRAGISQKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagaacataccaagaggaacttgggtatctggaaaaaattggtgctaacgca
tggcgcataaagaaaggctttgtacctaatatgaaggtggaagggatcttttatgccaat
gaatgcttagaaaaactgatgtttgatgaactgaagcaatcatgtcgttcacaaggttat
ggagggttcctccctggaatgaaacagattggaaatgtagctgctttgcctggaattata
gggaaatcgataggtcttcctgatgtgcactctggctatgggtttgctataggtaatatg
gcagcctttgacatgggaaatccagaagcagttgtctcccctggtggtgtaggttttgac
atcaattgtggggtccggttgctgcggacaaacctgatggagaaggatgtccagccggtc
aaggaacagctggctcagtgtatctttgaccacatcccagtgggtgtaggctctaaagga
atcattcctatgacagctcagaacttggaggaagctttggaaatggggatggactggtca
ttaagagaagggtatgcatgggcagaggacaaggaacattgtgaggaatatggacgtatg
cttcaggcagatcccaacaaagtcagtgccagggccaagaaaaggggcctccctcagctt
ggaacactaggagctggaaatcattatgctgaaatacaggtagtcgatgaaattttcaat
gaacatgctgccaagaaaatggggatagaatgtaaaggccaagtatgtatgatgatccac
tgtgggagtcgaggactagggcatcaggtggccacagatgccctagttgccatggagaaa
gccatgaaaagagacaagatagatgtaaatgatcgacagttggcctgcgctcggattaac
tcgcaagaaggacaggattatttgaaaggaatggcgggcgctgctaactacgcctgggtt
aatcgctctagtatgacttttctctctagacaggctttctcaaaaatgttcaactcatcc
cctgatgatctcgatatgcatgtgatatatgacgtgtcacacaacattgcgaaggtggag
gaacacttcgtggagggaaaacagaggtcactacttgtccacaggaagggttcaacgcgt
gcctttcctcctcatcatcctcttattcctgtcgactatcagttgacgggccagcccgta
ttgataggaggcaccatggggacttgtagctatgtactgacaggtactgagcagggaatg
ggtgagacgtttggaacgacatgtcacggtgcaggtcgagcattatctcgtgcaaagtcc
agacgtaacttagattacactgatgtcctgaatgccttggaggagaaaggaatcagtatc
cgcgttgcttcaccgaaactcgtcatggaagaggcaccagaatcttacaaaaatgttaca
gatgtcgttgatacatgccatcgagctggtattagtcaaaaatgtataaaactgcgtcca
atagctgtgataaaaggctga
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