Argopecten irradians (bay scallop): 138308109
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Entry
138308109 CDS
T10542
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138308109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138308109
03400 DNA repair and recombination proteins [BR:
airr03400
]
138308109
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
138308109
Messenger RNA biogenesis [BR:
airr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
138308109
DNA repair and recombination proteins [BR:
airr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
138308109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
RecQ_Zn_bind
Phage_TAC_19
CelTOS
Motif
Other DBs
NCBI-GeneID:
138308109
NCBI-ProteinID:
XP_069105155
LinkDB
All DBs
Position
14:complement(3678813..3681175)
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AA seq
547 aa
AA seq
DB search
MDAIKGKEKEITERFNIESLREHQIKGLEAVCTGKDVFVGTKTGSGKSMIYECVPVIFPN
AIVVVVAPLVSIMKEQSDRLCNLGFKATYIGKETTEEQDIVDGKFNFIFGSPEALVGEKK
WRNMLTKYGDSLKLLVVDEAHTVIQWGCSEKQKDVAFREWFSHIGELRAVRPDVPIAALT
ATSAPSQRRKIMRNLCFRQNSVVVSESPDRKNIKISSICIPNNNDIEDTFNWLLTELLDK
TENFQRHVVFAESISDVSKIYAIFRKRFGNSDLFDMFHSKTVENKKDFIREEMSKDGKIR
VLICTNSAGMGVNFFGVHNILHYGLPRQMDTLVQQMGRAGRDGVFSYELVIYKCHKGHLK
QTEEELVRLVKDNQCRRKVLCNSYGSEVEKLDPLHLCCDICEKLCKCASNGCPNSHPATL
FKLPASVDEMVREVEISDRILLRQKLDLLRFKLSDFSTVVSPDLTHGLTDEVIDFIVNNV
EKLFTPDDVLRSCAIWSYDVSVEITSIINDIFGDDIMYDAFESDVDENDDDKIMYVWYIY
NYSKIKI
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggatgctataaagggaaaagaaaaagaaatcacggagcgttttaacattgaatctcta
agggaacatcagataaagggtttagaagctgtatgtactggaaaagatgtgtttgtgggt
accaaaacaggaagtggtaaatctatgatctacgagtgcgtgccagttattttcccaaac
gcaatcgtcgtcgttgtagcacccctcgtcagtattatgaaagaacagtcagatcggctt
tgtaaccttggatttaaggcaacctacatcgggaaagagacgacagaggaacaggacatt
gttgatggaaaatttaatttcattttcggtagtccagaggcattagtcggcgagaaaaag
tggaggaacatgctgacgaaatacggagacagtctgaaactactcgttgtagatgaagca
cacacagtgatccagtgggggtgtagtgaaaaacaaaaagatgttgcctttagagagtgg
ttttcacacattggtgagctacgtgctgttcgcccagatgttccaatagcagcattaact
gcgacatcagctccgtcacaacgcagaaaaattatgagaaacctctgttttcgacaaaat
agtgttgtcgtgtctgaatcaccagacaggaagaacataaagatttcctcaatttgcata
cctaacaacaatgatattgaagatacatttaattggttacttacagaattgcttgataaa
acagaaaactttcaaagacatgtggtcttcgcagaaagcataagtgacgtgtccaaaata
tatgccatttttaggaaaagatttggtaatagtgatctttttgatatgtttcatagcaaa
actgtagaaaataagaaagactttattagagaagagatgtcaaaagatggtaaaattaga
gttttgatctgtacaaattcagcaggaatgggagttaatttttttggagtacacaacatt
ttacactatggtttgccgagacaaatggatacccttgtacagcaaatgggaagggcagga
agggatggtgttttttcctatgaacttgtgatatataaatgccacaaaggtcatttaaaa
caaactgaggaggagcttgtaagactggtgaaagacaatcaatgtagacgtaaggtgttg
tgcaattcctatggcagtgaagtagaaaaactagacccactacatctatgttgtgatata
tgtgaaaaactatgtaagtgtgcatcaaacggttgtccaaattctcatccagcaactctg
ttcaaattaccagcttctgtggatgaaatggtcagggaagtggaaatttcagacagaatt
ttgttacgacagaaattggatttattgaggtttaagctgtcagacttttcaacagttgtt
agtccggatctaactcatggtctaacagatgaagttattgactttattgtgaataatgtt
gagaagctattcacaccagatgatgttttgcgaagttgtgccatttggtcttatgatgtt
tctgttgaaataacaagtattataaatgacatttttggagatgatatcatgtatgatgct
tttgaaagtgatgttgatgaaaatgatgatgataagataatgtatgtttggtacatatac
aattattctaaaattaaaatataa
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