KEGG   Argopecten irradians (bay scallop): 138310223
Entry
138310223         CDS       T10542                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
airr  Argopecten irradians (bay scallop)
Pathway
airr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:airr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    138310223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:airr03021]
    138310223
   03036 Chromosome and associated proteins [BR:airr03036]
    138310223
Transcription machinery [BR:airr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     138310223
   Coactivators
    SAGA/TFTC/STAGA complex
     138310223
Chromosome and associated proteins [BR:airr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     138310223
    STAGA complex
     138310223
    TFTC complex
     138310223
    SAGA complex
     138310223
    SLIK complex
     138310223
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st TFIID_NTD2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_Gbeta WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N WD_LRWD1 PEP5_VPS11_N Beta-prop_RSE1_2nd Beta-prop_ACSF4 LisH_PAC1
Other DBs
NCBI-GeneID: 138310223
NCBI-ProteinID: XP_069107442
LinkDB
Position
16:6138606..6163878
AA seq 720 aa
MRCPTSESNTVQAAHQQANYNINAALADIKGKSVVAQCHESISRKMAAPGSHTVLPTPGV
LPSQNEPIIPKSDVSDKQTLLAVLQFLKKNNLKGTEELLKQEAGIKDDEVTPQSTTATES
DVSHALAAYKSSDDPSLYSDYYTDLKAFIDSCLDVHKVELAVILYPVFVHMYLELVYNGH
ETYAVEFFEKFHSDQEDYYQSDLRQLSTVVKRDHMQGNTLMENFKSSKFVIKMSRDSYIH
LKRRLQEKQMKPLLNIVQEHLFVDVFDGMPRNKQQIQLSSGAILGESEREANRVKVYYGL
LKEPDINIPLEEEEDTGEDDKPKKKKQKKDPLMMKKSKNDPNAPQNNRIPLPELKDSDKI
EKVTVFRETTKRVKVGSSNMPSICFYTLLNSFQGATCVEISEDSSLLAAGFSNSTIRVYS
LNSVKLRTMKKSKDLDIIDKEAEDVLERMMDDRTASDHKVLLGHSGPVYATNFSRDRKFL
ISASEDGTIRLWSLLTWTNLVCYKGHIYPVWDVKFSPHGHYFVSCGHDKTARVWSTDHSQ
PLRIFAGHLSDVDCASFHPNSNYIATGSSDRVVRMWDNLTGNCVRILTGHKGAVQVLCFS
PDGRFLASSGVDRCVLLWDISSGSLLSNMKGHTDTVYCLAFSREGATLASGGLDNYVRLW
DVHKVLQEVDMEADLSIPSSFTVNENPNLLFGSFPTKSTPVLAVHFTRRNLLLASGPHQT
NT seq 2163 nt   +upstreamnt  +downstreamnt
atgagatgtcccacttcagaaagtaacactgtacaagccgcacaccagcaagctaattat
aacatcaatgctgctctggcggatatcaaagggaaatcagtcgtcgcccaatgtcacgag
agtataagtcgaaaaatggcggcgcccggtagtcacactgttcttccaacgccgggcgtt
ttgcctagccagaacgagccaattattccaaagtctgatgtgtcagacaaacaaacatta
ctggccgtgctgcagtttttgaagaaaaataatttgaagggcacagaggaattgctaaag
caagaggcgggaataaaggatgatgaagttacgccgcagtcaactacagcaacggagagt
gatgtgtcacacgccttggcagcatacaagagttctgacgaccccagtctctatagtgat
tactatacagacctgaaggcctttatcgatagctgtctggatgttcataaggtagaatta
gctgtgatactgtacccagtgttcgtacacatgtaccttgagctggtttacaatggacat
gaaacctacgctgtggagttttttgagaagttccactctgaccaggaggactactatcaa
tctgacctccgtcagttgtccactgtagtcaagcgagaccacatgcaggggaacacgctg
atggaaaacttcaaatccagcaaatttgtgattaagatgtctcgagactcgtacatacac
ctgaaaagacgcctacaggaaaaacagatgaaacctttactgaacattgtacaggaacat
ctttttgtggacgtttttgatggtatgccgcggaacaaacaacagatccaactctctagt
ggagccatattaggggagtcagaaagggaagctaaccgagtgaaggtgtattatgggttg
ctgaaggaacccgacatcaatattcctctagaggaggaagaagacacaggagaagatgat
aaaccgaagaaaaagaaacagaagaaggatccgctcatgatgaaaaaatcgaaaaatgat
cccaacgctccgcagaataatagaattccactcccagaactgaaagacagtgacaagatt
gagaaagttacggtatttcgggagacgacaaaacgagtgaaggttggctcctctaacatg
ccttccatctgtttctacacacttctcaacagcttccagggggcgacgtgcgtggagatc
agtgaagactcgagcctacttgctgcggggttctccaactccaccatcagggtgtatagt
cttaattcagtgaagttacgtaccatgaaaaagtcaaaggacctcgacatcatcgacaaa
gaagcagaggacgttcttgaaaggatgatggatgaccgaacagcaagcgaccataaagtt
ttactcggacacagtggccctgtatacgctacaaactttagtagagatcggaagttcctg
atatctgcatcagaagatgggacaattcgtctttggagtttgctcacctggacaaatcta
gtgtgttataagggacacatataccctgtatgggacgtcaaattcagtcctcatggtcac
tattttgtgtcgtgtggacacgacaaaacggctcgagtctggtcaacagatcactcccaa
ccactgcggatatttgctggacatctctcagacgttgattgtgcatcattccacccaaac
agtaactacatcgccacaggttcaagtgaccgagtcgtcagaatgtgggacaacttgacc
ggcaactgtgtccgaattctcacaggacataagggagctgtacaagtgttgtgtttctca
cctgatggcagattccttgcatcttcaggtgttgatcgttgtgttctgctctgggacatt
tccagtggaagtttgttatccaacatgaaggggcatacagacacagtttattgtctggca
tttagtcgtgagggagctacgcttgcttcaggtggtttggataactatgtgagactctgg
gacgtccacaaggttctacaagaagtagacatggaagctgacttgagtatcccgagttca
ttcaccgtgaatgagaacccaaatctgctgtttggctcgttccctaccaagtccactcca
gtcctcgcggtacatttcactcggaggaatttattactggccagcggaccccatcagact
tga

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