Argopecten irradians (bay scallop): 138310315
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Entry
138310315 CDS
T10542
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138310315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
airr00536
]
138310315
Glycosaminoglycan binding proteins [BR:
airr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138310315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
138310315
NCBI-ProteinID:
XP_069107572
LinkDB
All DBs
Position
16:29945122..30092947
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AA seq
1261 aa
AA seq
DB search
MVSLKALNPQGKHGTRMSVYICLCYRLPGRVHCFVCLSYSHKRQENNIDLLTAVGVPSVT
SGVGYETGITGYPAFSFTERAYIRKSAAEIFGAALKYRNFAVTLAIKPTRREGGFVFSVK
NPYNTVIIFGVYIEPSSIPRRDNLVLYYTENARFSDRQPSNVLANFTVDSLYNKWTELGI
KVEENTATLYVNCQRTETSRISRDTARLLAIEPGSSFYIAQGGPNFEGSQFVGAINELKI
HEDLREAERDCADDLSGSGMTSGDDEDGLTSSTLPPITDIDDIVTGNGEKGDKGDPGQTG
PQGLKGQKGEIGPRGLPGPMPSIPPPPPQLPSLKGDKGDMGEKGDRGEVGVPGFPGQKGE
QGVEGLDGMPGIPGESGQKGEPGVQGMPGNPGIGTAGQKGDRGDPAIVDHDEIATILLGM
SEFNIKGEPGEKGAMGMAGPAGPEGPAGRDGFSGTPGDPGMIGPVGPMGPKGDKGEPGMG
IPGSDGLPGPMGPAGSIGLTGPQGRPGPPGPPGPVTLAEGSGGEDAVGEMGPAGPKGEQG
EPGMPGPMGIQGPVGPMGSPGVPGIPGLKGEPGVFAYNMSELMGPPGKQGVAGTPGLPGM
TGVPGADGQRGPLGPKGDKGERGLQGVAGLPGADGANGRDGKAGPIGLPGRDGINGVVGP
MGPPGPPGPPGTGMGGDDIDMVAGSGGGSCDCEGVVGPMGPAGPTGPAGLPGVPGIDGSP
GEPGQRGLAGIPGRDGEMGPKGDRGADGMDGEAGNPGPQGRAGTPGIPGTSGRDGIDGTP
GIKGEMGAPGVGIVGPVGPAGSDGEDGRPGQQGPPGLPGPPGPPGPTVTLEGVGSGEEGA
INFESGVTGAKGEKGDTGMAGPRGIDGLPGKRGPVGLPGPAGPAGEPGMHGTPGAKGDVG
PAGRDGLNGAPAAPGAPGTPGTPGDPGPQGLPGSEGPAGPAGPPGTPGLPGPAGPPGPRG
VGGGDGGDILFGDGEKGEKGEDGLPGRDGAPGEPGQPGPIGPRGFRGAKGAIGMPGLMGR
RGWRGRKGERGYGLRGPKGEPGVPGVGGNGEAVGAGQKGEPGEIGLPGVPGTPGRDGSNG
LPGARGRDGYDGDKGDKGDAGRDGAIGPVGPPGPPGNGYGESTLEGARGPIGPAGPPGPP
GRPGTPGTPGTNGGGPHNLSGGGGGSGAVVFNTANELMTVANNMPAGTFVYINNEEKVYL
RVNNGFRLIQTKLVELGHFLPLPTPTTAAPTSAPPAPIRYRPKTTPQPYLPFVRFRQTRQ
R
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctctgaaagcactgaatcctcaaggaaaacatggtacaagaatgtctgtatat
atctgtctctgttacagacttccaggccgagttcactgttttgtgtgtctgtcttattct
cacaaacgacaagaaaacaacatagacttattgacagctgtcggagtgccatctgttact
agtggggtcggctacgaaacgggaattaccggctacccagcattctcttttaccgaaaga
gcatatatacgcaaaagtgctgcggaaatattcggtgcagccttaaagtatcgcaacttt
gcagtgactttagcaataaaaccgacgcggagagagggaggttttgtattttctgtgaaa
aacccatataacacagtgataatttttggagtttacatagaaccttcatcgattccgagg
cgggataatttagtgctttattacacagagaatgcacggttctcagatcgtcagccatca
aatgtgctagctaatttcactgtggattctctatataataaatggacggaactaggaatt
aaagtagaggagaatacagcaacgctttatgtgaattgtcagagaacagaaacaagtcgg
attagtagggatacagcccgactattagccatagaacctgggtcatcattctacatcgca
caagggggacctaactttgaaggaagtcaatttgttggtgctattaacgaattaaaaata
catgaagatctacgagaagcagaacgagactgtgccgacgacctatcgggatcaggcatg
acatcaggagacgatgaagatggtcttacgtcgtcaacattgccgccgattactgacatt
gatgacatcgttactgggaacggggagaagggagacaaaggagatccaggacagaccggg
ccacagggacttaagggacagaagggagaaataggaccaaggggattaccaggaccaatg
ccaagtataccaccaccgccaccacaactaccatctctcaagggagataaaggtgacatg
ggggagaaaggagacaggggagaagtcggtgtcccaggattccctggacagaaaggagag
cagggagttgagggtctggatggaatgccagggataccaggggagagcggacagaaggga
gaaccaggagtacaaggcatgccgggaaatccaggaatcggtacagcgggacagaaagga
gacagaggagacccagccattgtggaccacgacgaaatcgcaaccatcttattgggcatg
tcagaatttaacatcaagggagagccgggagagaaaggggccatggggatggccggtcct
gctggccccgagggacccgcaggtagagatggattctcggggaccccaggggatcccgga
atgattggacctgtaggtcccatgggacctaagggtgataaaggtgaaccaggtatggga
attccggggtcagatggtttacctggcccaatgggtcctgctgggtctataggtctgacc
gggccccagggcaggccgggacccccgggacctcctggtccagtgacactagcggaagga
tctggtggagaggatgcggttggggagatgggacctgctggacctaagggagaacagggc
gagccaggaatgcctggtccaatgggaattcaggggcctgttggaccgatgggctctcca
ggtgtcccgggtatacctggacttaaaggtgagccaggagtgtttgcttacaacatgtcg
gagctgatgggaccgcctggaaagcagggagtcgctggaacaccagggttaccgggcatg
accggtgtacctggagctgatggacaaagaggcccattgggtccaaagggagataaggga
gagagagggctccagggagtggccggtttaccgggagctgacggagctaatggacgagac
ggaaaggctggtcccattggtctgcctggtcgtgacggtattaacggagtagtaggtccc
atgggacccccaggtcctcctggacccccgggcactggaatgggcggagacgacatcgac
atggtggcggggtctggaggtggaagctgtgactgtgaaggagtagtgggacccatggga
cctgctggacctactggtcccgctggactcccaggagtacctggtatagatggtagccct
ggagaacctggacaacgaggacttgctggaattcctggcagggacggagaaatgggacca
aaaggagacaggggagctgacggtatggacggtgaagcaggaaatcccggtccccagggc
cgagcaggtaccccaggtatccctggtactagtggtcgagatggtatagacggaacacca
ggaataaagggtgaaatgggagcccctggggtaggtattgtaggacccgtaggcccagct
ggatctgatggtgaggatggtcgtccaggacagcagggaccaccgggtctccctggtccc
ccaggacccccagggccgactgtcacattggagggtgtcgggtccggcgaggaaggagcc
atcaacttcgaaagtggagtgactggagcaaagggagagaagggagatactggtatggct
ggtccaagaggaattgatggtctccccggtaagcgcggcccagttgggctacctggacca
gcgggaccagctggagaaccaggaatgcatggaacacctggtgctaagggagatgtggga
cctgctggtcgagacggactgaacggtgcacctgctgccccaggagctccaggaacgcca
ggtacccccggagatccaggaccacaggggctgcctggcagtgagggacctgctgggccg
gctggacctcctggcacccctggtctgcctggacctgccggacctcctggccccagaggt
gttggtggtggggacggtggagatattctgtttggtgacggggaaaagggtgagaaggga
gaggacggcttgccaggacgtgacggtgcccccggtgaaccaggacagccaggacctata
ggaccgaggggcttccgtggagcaaagggagccataggcatgcctggtcttatgggtcgg
cgaggatggagaggaaggaaaggagagcgaggatatggcctacgaggaccaaagggtgaa
ccaggtgttcccggagtaggtggaaatggtgaagcagttggagcagggcagaagggtgag
cccggtgagataggcctgccaggtgttccaggaacaccaggacgtgatgggtctaatggc
ttacctggagctagaggcagagatggctacgatggggacaagggagacaagggagacgcc
ggtagagatggagcgataggaccagtaggaccaccaggaccgcccggcaatggttacgga
gagtcaactctagagggcgctaggggaccaataggaccagccggaccaccggggcctcct
ggccgaccaggaactccgggcacaccagggactaatggtgggggaccacacaacctgtct
gggggaggagggggatcaggggctgttgtattcaatactgctaatgaactgatgactgtt
gccaataacatgcccgctgggacatttgtctacatcaataacgaagagaaagtctacctg
agagtaaacaatggcttcagactcatacagacaaagttggtggagttgggacacttcctc
cccttgccgacacctactacagctgcacccaccagcgctcctccggcaccgatcagatac
aggcctaagaccacgcctcaaccatacctccccttcgtccgattccggcagactcgtcaa
cgatag
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