Argopecten irradians (bay scallop): 138316267
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Entry
138316267 CDS
T10542
Name
(RefSeq) cleavage stimulation factor subunit 1-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138316267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138316267
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
138316267
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
CSTF1_dimer
WDR55
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
CFAP251_N
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_VPS8
DSE1_N
Beta-prop_WDR35_TULP_N
ASA1
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_EIPR1
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_NWD2_C
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
138316267
NCBI-ProteinID:
XP_069113989
LinkDB
All DBs
Position
1
Genome browser
AA seq
431 aa
AA seq
DB search
MGSEHDEVKQRDLMYRLMISQLFYDGHQKLAVSLSTLVKAHPACPPSDRLFKVLKYGLEI
EEEIHGKELIGSENVAPGSGIDLEYETDVQTISPEAALYETCYVTAHKGPCRAGAFHSGG
KLIATGSEDSSIKILDVERMLAKSATPAEIIAMETPQQAMENHPVIRTLYDHNDEVTCLD
FHPNHQILASGSKDYSIKFFEYSKPSVKKAYKSIQEASEVRCLSFHPSGEYILCGTKHPT
LRLYDVNTFQCFVGRHPSHQHEGPLTAVKWCPNANLFVTSSKDGDIKIWDGVSNLCINTF
KKAHDGNEVCSVTFSRNSKYVVSSGKDSLVKLWELSTNRCLIVYTGAGATGKQQHRTQAV
FNHTEDYVLFPDEATTSLCCWDSRNAERQRLLSLGHNGAVRYIAHSPTGPAFITCSEDFR
ARFWYRKADTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggggtctgaacacgatgaagttaaacaacgagatttgatgtatagactgatgataagt
cagttgttttatgatggacatcagaaactggcggtatctctgtcgacactagtgaaggcc
catccagcctgtcctccgtctgaccgcctcttcaaggtgctcaagtatggactggagatt
gaggaagaaattcacgggaaggagctgatcggatctgaaaatgtagcccctggatcggga
atcgacctggaatatgagacggacgttcaaaccatatccccagaggctgctttgtatgag
acatgttatgtgacggctcacaaagggccatgtcgagctggggccttccacagtggagga
aaactgattgcgaccggatcagaagactcttccatcaagattttggatgtggaaaggatg
ttagcgaagagtgccacaccagctgaaatcattgccatggaaaccccccagcaggccatg
gagaatcacccagttatccgaactttatatgatcataatgacgaggtgacatgtcttgac
tttcatccaaaccatcagattttggcttctggcagtaaagactacagtatcaagttcttt
gagtattccaaaccctcagtgaaaaaagcttataaaagtatacaggaagcatcagaggtg
cgctgtttatccttccatccatcaggcgaatacattctctgtggtaccaaacaccctaca
ttgcgtctatatgatgtgaacacattccagtgttttgtaggacgacatccaagccaccaa
catgaaggacctctgacagctgttaaatggtgtcccaatgctaacctgtttgtcacaagt
tcgaaagatggagatattaagatttgggatggagtcagcaatctctgcatcaacacattt
aaaaaagcacacgatggaaacgaggtgtgctctgtcactttctccaggaactcaaagtat
gtggtgtctagcggtaaagattcactggtgaagttgtgggagctgtccacaaaccgttgt
cttattgtgtacacaggagctggagccaccgggaaacagcaacatcggactcaggctgtg
tttaaccatactgaagactatgtgctattccctgatgaggctacaacaagtctttgttgt
tgggattccagaaacgctgaacgacaacgtctcttatcactaggccacaacggcgctgtc
cgttacattgctcactcaccaaccggcccagcattcataacatgtagtgaggacttcaga
gcgaggttctggtacaggaaggctgacacagactaa
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