KEGG   Argopecten irradians (bay scallop): 138318903
Entry
138318903         CDS       T10542                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
airr  Argopecten irradians (bay scallop)
Pathway
airr03020  RNA polymerase
airr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:airr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    138318903
  09124 Replication and repair
   03420 Nucleotide excision repair
    138318903
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:airr03021]
    138318903
   03019 Messenger RNA biogenesis [BR:airr03019]
    138318903
   03400 DNA repair and recombination proteins [BR:airr03400]
    138318903
Transcription machinery [BR:airr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     138318903
Messenger RNA biogenesis [BR:airr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     138318903
DNA repair and recombination proteins [BR:airr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      138318903
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 138318903
NCBI-ProteinID: XP_069117814
LinkDB
Position
3:48556481..48573563
AA seq 172 aa
MFYHVSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGLIQ
PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPADMEFD
PNSNPPCYKTKDEDVVIQQDDEIRIKIVGTRVDAKDIFAIGTLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttaccacgtgtctctagagcatgaaattcttctccatccaagatactttggacca
aatctactgaatatagtcaaacagaagttatttacagaagttgaaggaacctgcactgga
aagtatgggtttgttatagcagttaccaccattgacaacataggtgcaggtttgatccag
ccaagtcgagggtttgtggtctatcctgtcaagtacaaggccattgtgtttagaccattc
aaaggagaagtgttagatgctgttgtcactcaggtcaacaaggttggattgtttacagaa
attggtccgctgtcctgctttatatctcgacattcaattcctgcggatatggaatttgac
cctaattctaacccaccatgttacaagactaaagatgaggatgtagtcatacagcaagat
gatgagatcagaattaagattgttggtacacgagttgatgccaaggacatttttgcaatt
gggacactaatggatgactatttaggcctggtgagctaa

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