Argopecten irradians (bay scallop): 138320854
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Entry
138320854 CDS
T10542
Name
(RefSeq) ATP-dependent RNA helicase DDX39A-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03013
Nucleocytoplasmic transport
airr03015
mRNA surveillance pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138320854
09122 Translation
03013 Nucleocytoplasmic transport
138320854
03015 mRNA surveillance pathway
138320854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138320854
03041 Spliceosome [BR:
airr03041
]
138320854
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138320854
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138320854
Spliceosome [BR:
airr03041
]
Complex C
Other components
EJC/TREX
138320854
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138320854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ZNHIT3_C
ApbA
P-loop_SecA
DUF3549
Motif
Other DBs
NCBI-GeneID:
138320854
NCBI-ProteinID:
XP_069120223
LinkDB
All DBs
Position
4:complement(19210061..19220817)
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AA seq
425 aa
AA seq
DB search
MENTDTELDYIDEFEDETTPQKVAGPTPGDSMKGEYASIHSSGFRDFLLKPELLRSIADC
GFEHPSQVQHECIPQAVLSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVIVLAHIR
ELAFQIADDYRKLSRHMGNIKVGVFFGGIPIKRDEEVLTSNCPHVVIGTPGRILDLTRKG
KLKLGNVRHFILDECDKMLQTLDMRKDVQEIFKLTPHEKQVMMFSATLGKESRLVCKRFM
QDPLEVFVDDCSKLTLHGLRQFYVKVTEKEKNRQLMKLLDALEFNQVIIFVKSVQRCTSL
AQLLLEQNFPAITIHSGMQQEERLSRYKQFKEFEKRLLVSTNLFGRGMDIVGVNIVFNYD
MAEDSDTFLHRVARAGRFGTKGMAITFISSEMDAAIMNEVQERFEVNVPVLPDEIDTSSY
LPGNG
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggagaataccgatacagaacttgactacatagacgaatttgaggatgaaaccacgccc
caaaaggtagctggtcctacccccggggacagcatgaaaggagagtatgcctctatacac
agttcgggatttagagactttcttctcaaaccagaacttcttcggtccatcgccgactgc
ggatttgaacatccctcacaagtccaacacgagtgtatcccacaagcagtgctgtctatg
gacgtgttgtgtcaggccaagtccgggatggggaagacggctgtctttgtactggccaca
ctacagcaactagaacccgtggatggacaggtctctgtcatagtcttggcgcacattcgg
gaacttgccttccaaatagcagacgattaccgcaagttgtcacgtcacatgggtaatatc
aaggtcggtgtgttttttggaggaattcctatcaagcgtgatgaggaggtgctgaccagc
aactgtccacacgttgtcattggaacaccaggccgtattctagacctgacccggaaaggg
aaactcaaactgggaaacgtccgccatttcatcttggatgaatgtgacaagatgcttcaa
acattagacatgcggaaggatgtccaagagattttcaaactgacaccgcacgagaagcaa
gtgatgatgttcagtgccactcttgggaaggaatcccgccttgtctgcaagaggtttatg
caggatccactggaggtctttgtagatgactgttccaagctgaccttgcacggccttcga
cagttttatgtcaaggtcacggagaaagaaaagaacagacaactcatgaagcttctcgac
gcactggaatttaaccaggtgatcatctttgtgaagtctgtccagaggtgtacgtcccta
gcacagttgttactggagcagaacttccccgccattactatacacagtgggatgcaacag
gaggaaaggttgtctagatacaagcagtttaaggaattcgagaagcgactcctggtgtcc
acgaatttgtttggccgggggatggatattgtcggagtcaacattgtatttaattacgat
atggcggaggattcagacacattcctccatagggtggccagagctggtagattcggaacc
aagggtatggctattacgtttatctctagtgagatggacgccgccatcatgaatgaggta
caggagcgatttgaggtgaacgttcctgttttacccgatgaaatagacacatcctcttac
ctgccaggaaatggatga
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