Argopecten irradians (bay scallop): 138321204
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Entry
138321204 CDS
T10542
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138321204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
airr03041
]
138321204
Spliceosome [BR:
airr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
138321204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
PRP4
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Ge1_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Nup120_160
MIOS_WD40
WD40_like
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
138321204
NCBI-ProteinID:
XP_069120812
LinkDB
All DBs
Position
4:complement(28936267..28962851)
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AA seq
515 aa
AA seq
DB search
MSDDEEEPGLHFRPNKPVVYGSLEEKERQRLANIKTSGSLASDAIEAGKAAGNIVINDGS
RYEISEHVDQSELLAELERRKKARHIQVSTDDSEVKASLRQLGEPICLFGEGPADRRERL
KKILSQIGEDALKQRKAEEIELKKKKAEENITWYHEGSESLKEARFWIAEYSIPRAKNRL
AAQKQTKFIPTTQKNAKTQDIQKRIGAISNECSQIGDNRPLSFCNFSPDGKMLAVSSWSG
LCKLWSIPDCGLIRQLRGHGGNVGAIVFHPQATLSLDDKACCMASCGQDGSVKLWNLVSE
EPMADIEGHAPYRVSRLAYHPSGRFLGTCCFDNSWRLWDLEAQEEILHQEGHSKAVYDIA
FQNDGALSVTGGMDGFGRVWDLRTGRCIMFMEGHQQSVLGVDFSPDGYHIATGSEDNTAK
IWDLRQHKCVYTIPAHTNLISKVKFQPDHSNYLVTSSYDCTSKIWAHPTWAPLKTLAGHE
GKVMAIDISPDRKYIASVSYDRTFKLWATDIQGGL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatgaggaagaacccggtcttcactttcgaccaaacaaacctgttgtttac
ggaagtttggaagaaaaagaaaggcagagattggctaacatcaagacttccggatcattg
gccagtgatgctattgaagctggaaaagcagctggaaatattgttattaatgatggatcc
agatatgagatcagtgaacatgtagaccagtcagaactgttggcagagctggagaggagg
aagaaggctcgtcatatccaggtatccactgacgactctgaagtcaaggccagtctacga
caactaggagagcccatctgtctatttggggaaggaccagctgacaggagagaaagactt
aaaaagattttatcacagattggagaggatgctcttaagcaaaggaaagcagaagaaatt
gaactcaagaagaaaaaagctgaagagaatattacttggtaccatgaaggctctgagagt
ttgaaggaggcacgcttctggatagcagagtattccataccaagggccaagaatagatta
gcagcccagaaacaaacaaaattcattcctaccacacagaaaaatgccaagacacaagat
attcagaaacgtattggggccatatctaatgaatgcagtcagattggtgataatcgtcca
ctatcgttctgcaacttcagtcctgatgggaaaatgttggcggtgtcgtcatggtcaggg
ctttgtaagctgtggtctatacctgactgtggattgattagacaactcagaggacatggt
ggcaatgtaggagctatagttttccacccacaagccacactctcactggatgataaggcc
tgctgtatggcttcatgtggtcaagacggctcagtaaaactttggaatcttgtcagcgag
gagcctatggcagacattgaaggtcacgccccctacagagtgtcccgtctggcctatcat
ccctcagggcgctttctaggaacatgctgttttgacaactcctggagactttgggacttg
gaggcccaggaggagatcctccatcaagagggacacagtaaggccgtatatgacatagcc
ttccaaaacgatggagctctgtctgtcactgggggtatggatgggtttgggcgagtctgg
gatctccgtactggccgctgtatcatgttcatggagggtcatcaacaaagtgtgctgggt
gtcgacttctccccggacggatatcacattgccactggaagtgaagataacactgctaaa
atctgggatctccgacaacacaagtgtgtctataccattccagctcacactaacctcatc
tcaaaggtcaagttccaaccggaccattctaattacctggtaacatcttcatatgactgt
acatctaagatctgggcccaccctacctgggcaccactgaagaccctggccggccacgag
ggtaaggtcatggcgatagacatctcacctgaccgcaaatacatcgcatcagtatcctac
gacagaacattcaaattgtgggccacagatatccagggtggcctttaa
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