Argopecten irradians (bay scallop): 138321603
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Entry
138321603 CDS
T10542
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03013
Nucleocytoplasmic transport
airr03015
mRNA surveillance pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138321603
09122 Translation
03013 Nucleocytoplasmic transport
138321603
03015 mRNA surveillance pathway
138321603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138321603
03041 Spliceosome [BR:
airr03041
]
138321603
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138321603
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138321603
Spliceosome [BR:
airr03041
]
Complex C
Other components
EJC/TREX
138321603
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138321603
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
138321603
NCBI-ProteinID:
XP_069121481
LinkDB
All DBs
Position
4:39123329..39132024
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AA seq
428 aa
AA seq
DB search
MADNENEAELLDYEEEENEATADGAGDVQQQIKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVL
AHTRELAFQISKEYERFSKYMNSTKVAVFFGGMSIKKDEEVLKKNCPHIVVGTPGRILAL
VRQKQLVLKHAKHFILDECDKMLEELDMRRDVQEIFRSTPHEKQVMMFSATLSKDVRAIC
RKFMQDPMEVFVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQR
CMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNEVQERFEVNITELPDEID
ISSYIEGR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacgaaaatgaggcagaacttttagactacgaggaagaagagaacgaagct
actgccgatggagccggtgatgttcagcaacaaatcaagaaagatgtgaagggaacatac
gtgtccatccacagctctggattcagagactttcttctcaaaccagagttgctcagagcc
attgtagactgtggttttgaacatccttcagaagttcagcacgaatgtatcccacaagcc
atcttatccatggatgtgctatgtcaggccaagtctggtatgggaaagacagcagtgttt
gttttggcaactcttcagcaactggagcctgttgatggccaggtgtctgttctggttttg
gcacataccagggaactggctttccaaatcagcaaggaatatgaaagattcagcaaatac
atgaacagcacaaaggtagcagtcttctttggcggaatgtctatcaagaaggatgaagag
gtcctcaaaaagaactgcccacacattgtggttggaacacctggaaggatcctagccctc
gtacgccaaaaacaactcgtcctaaaacatgcaaaacatttcatcttggatgagtgtgac
aaaatgttagaagaactagacatgaggagagacgttcaggagatcttcagatcaactccc
catgagaagcaagtcatgatgttcagtgccactctcagcaaagatgtccgtgcgatctgc
agaaagtttatgcaagatcctatggaagtgtttgttgatgatgactccaagctcaccctt
cacggtctacagcagcattatgtcaaactgaaggacaatgaaaagaacaggaagcttttt
gaacttcttgatgttcttgaattcaaccaggtgatcatctttgtcaagtctgtccagaga
tgtatggccctggcacagttgttggttgaacagaacttcccagctattgctatccataga
gcaatgacacaggaggaaagattatctcgttatcaacagttcaaggatttccagaaaaga
attctggtagccaccaacttgtttggacgtggaatggatattgagagagtcaacattgtg
tttaactatgacatgccagaaaattcggacacatatttacacagggtggctcgagccgga
agatttggtaccaaaggtcttgccatcacatttgtctctgatgagactgatgccaaggtg
ttaaatgaagtccaggaacgatttgaggtcaacataacagaactaccagacgagattgac
atctcctcatacattgagggtcgataa
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