Argopecten irradians (bay scallop): 138321663
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Entry
138321663 CDS
T10542
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138321663
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
airr00536
]
138321663
Glycosaminoglycan binding proteins [BR:
airr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138321663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Secapin
FnI_RECK
Motif
Other DBs
NCBI-GeneID:
138321663
NCBI-ProteinID:
XP_069121596
LinkDB
All DBs
Position
4:complement(40522371..40553725)
Genome browser
AA seq
1398 aa
AA seq
DB search
MSSYGNVRWSILLICIIGKISAQRINYAQNGLPEPLDCDLGGKRLEHGTEINECQLLKTC
RCDNGRLVCSEIICDVPPQCPPGQDLVVTEDSQCCPVCREIIGKKEMMGKVMAGNLEGAK
IAAVVADEKAGPAMSTLPLTQGVPGPRGPAGPMGPAGQQGFMGQRGEPGETGPPGSPGQR
GFPGPPGPPGSDGDEGLPGEQGPSGPIGSPGNPGRPGMPGLPGPKGHRGFPGPVGKDGPA
GAQGSKGPAGLSGPPGAPGPMGPTGQTGERGRDGSPGPMGARGLDGVAGESGPQGPNGNP
GPPGFSGSPGQKGDAGQSGQRGPMGLSGPPGENGLAGPPGTPGDSGFPGKDGIAGEKGAQ
GLQGAPGSPGFPGPQGPPGESGEPGTAGMKGEPGMDGANGREGAQGRQGPPGAQGERGLP
GLAGNPGTRGPQGLPGPMGAPGVSGDRGPQGLQGMPGAMGPPGQQGNDGERGLPGEPGEA
GENGLQGPAGLPGSPGPRGQPGTSGKNGYQGPPGPGGNPGEMGKPGEQGPTGPAGIPGLP
GPSGPKGDEGSSGRDGDTGPPGRPGPRGEKGPAGESGPQGPPGAAGPQGERGESGPIGEP
GFQGITGQAGAPGEAGRPGDPGIMGEPGVPGEAGARGDRGFPGEPGPVGATGAPGERGSE
GPPGEVGQGGPPGPSGPRGDTGSPGLVGLPGEAGPPGLRGAQGFTGEPGEAGAPGLQGVP
GEQGTPGAPGIVGPASIVMPEKGDRGAPGESGPSGEPGEGGPRGYAGPPGALGPVGPPGP
AGESGPEGDTGKPGNRGDPGPRGYPGEPGPAGAPGQDGLNGSPGAPGETGAMGLSGSPGA
PGRAGAPGLPGDKGNTGMAGPPGRAGEQGDRGEIGPPGPPGAAGAPGFPGADGSPGDRGS
DGQPGAQGPMGPAGPQGERGGPGFPGMPGEIGPPGDAGPQGVTGNPGKDGLDGIPGPPGS
PGSMGGAGYPGQPGEQGAPGMDGNMGPPGLPGSKGDRGPQGANGLQGASGPQGPMGATGA
QGDQGERGERGATGESGPVGAPGQQGEQGPAGPQGDKGATGKPGPRGDKGWPGMPGAQGM
PGPQGNVGEMGHSGPPGPPGQPGVQGPRGTSGRDGEPGPPGLPGPQGPRGPTGHDGDSGP
AGPPGPRGAPGAPGYGQMCAGAGPAPVKAGSYMYDEAFRELPSTFLRSLQDSIDRLYVPD
GTKKAPARDCSHLYHAQESDEARAKLKNGIYMIDPDGGKLENAIPAYCRFESMETCIRPG
QEELTWKTVEQFIGSTKEFYYKEKRQLRVLQEVSDSSRQTLTYKCRNHDINLSTTSFETF
LGCNVDANKRNGAKPRYVDVHVDEDNCNMTGEWGQKVFTLESRKAEALPILDVDINESDI
NGSQAEFKIVLGEVCFRA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgtacggtaacgtacgatggagcattctgctcatatgtatcattggaaaaata
tcagctcaaaggattaactacgctcaaaatggattgccagaaccacttgattgcgacctt
ggaggcaaacgtctcgaacatggaacagaaatcaacgaatgccagctcctgaaaacttgc
cgatgtgacaatggaaggctagtctgtagtgagataatctgtgatgtacctcctcagtgc
ccacctggtcaggatttagtggtgactgaagactcacaatgctgtcctgtctgcagagaa
attattggcaaaaaggaaatgatgggaaaagtgatggctggtaatcttgaaggcgcgaaa
attgctgcggttgtcgccgatgagaaggcaggcccagcaatgtccaccctcccactgaca
cagggtgttcctggaccacgtggacccgcaggaccgatgggaccagctggacaacaggga
ttcatgggacagcgaggtgaaccaggagagactggaccaccaggatcaccaggacagcga
ggttttcccggcccacccggtccaccaggatccgatggcgatgagggacttccaggagag
cagggaccgtctggaccaataggatcaccaggaaacccaggtcgccccggtatgcccggt
ctgccaggacctaaaggccacaggggattcccaggccccgttggaaaggacggacctgct
ggagcacagggatcgaagggacctgctggcctctctggtcctccaggagcccccggaccc
atgggaccaactggacaaactggagagcgtggacgagatggatccccaggaccaatggga
gcccgcggattggatggagttgctggagaaagtggacctcagggaccaaatggaaaccca
ggacccccaggtttctcaggcagtcctggacaaaagggtgatgctggtcagtccggtcag
cgtggacctatgggtctttcgggaccccctggtgagaacggactcgctggaccaccaggt
acacctggagattccggatttccaggaaaggatggaattgccggtgaaaagggagcccag
ggtcttcaaggtgccccaggttctcctggcttcccaggaccccagggacccccgggagag
tctggtgaaccaggaacagcaggaatgaagggtgaaccgggaatggatggggctaatggc
cgagagggagcccaaggccgacagggtccaccaggagctcagggagaacgtggtctgcca
ggattagctggaaacccaggaacacgtggaccacaaggattgcccggaccaatgggagca
cctggagtttccggagataggggaccacaaggtctgcaaggaatgccaggagcaatggga
ccaccaggtcagcagggaaatgacggagagaggggccttccgggtgagcccggagaggct
ggagagaacggccttcagggaccagcaggattaccaggatccccaggacccaggggacaa
ccaggaacgagcgggaaaaatggctaccaaggacccccgggaccaggtggaaacccagga
gaaatgggaaagccaggagaacagggaccaacaggaccagcgggtatcccaggactgcca
ggcccatccggccctaagggagacgaaggttcttcaggaagggacggtgacactggccca
cccggacgaccaggaccacgtggagagaagggacctgcaggagaatctggaccacaagga
ccaccaggagccgctggacctcagggtgaacgtggtgagtctggaccaatcggtgaacca
ggattccagggtataaccggacaagccggagctccaggagaagctggaaggccaggagat
cctggaatcatgggagaaccaggtgtgccaggagaggcaggagcaaggggtgaccgtgga
ttccccggagagcccggacccgttggagcaacaggagccccaggagaaagaggatcagaa
ggaccaccaggagaagttggacagggtggacccccaggaccatcaggacctcgtggagac
actggatcaccaggacttgttggtcttccaggagaggctggcccaccaggattgagagga
gcacaaggttttactggagaaccaggagaggctggagccccaggtctgcagggagtgcca
ggtgagcagggaacccctggagctccaggtattgtcggacccgccagtattgtcatgccg
gagaagggagatcgcggagcgccgggagagtccggaccatctggagagccaggagaggga
ggaccaagaggatacgctggaccaccaggagctcttggaccagttggaccaccaggacca
gccggcgagagtgggccagaaggagacactggaaaaccaggaaataggggagaccccgga
ccaagaggatacccaggagagccaggaccagcaggtgctccaggtcaagatggacttaat
ggttcaccaggcgctccaggagagactggcgccatgggactatctggctccccaggcgct
cctggcagagcaggagcaccaggcttgcccggcgataagggaaatactggaatggctgga
ccacctggtagagctggagaacagggagatcgtggagagattggacctccaggacctcct
ggtgctgccggtgcccccggattccctggagctgacggttcccctggtgacagaggaagc
gacggacaacctggagcacaaggaccaatgggtccagcgggacctcagggagagcgaggt
ggaccaggattccctggaatgccgggagagattggaccacctggagatgctggaccacag
ggagtgactggaaatccaggaaaggatggacttgatggaatcccaggacctccaggatca
ccaggatcaatgggaggagccggatacccaggacagccaggagaacaaggagcacctggt
atggatggtaacatgggacccccaggtttgcctggctccaaaggagatagaggaccacag
ggcgctaacggactccagggagcttcaggaccacagggacctatgggagccactggtgcc
caaggagatcaaggtgaacgaggagagaggggagcgacaggagaaagcggaccggtagga
gctccgggacaacaaggagaacagggaccagctggaccccagggtgacaagggagccacc
ggcaaaccaggaccaagaggagacaagggctggccaggaatgcccggcgcacagggaatg
ccaggacctcagggaaatgttggtgaaatgggacattctggaccccccggacctccaggc
caaccgggtgtacaaggaccacgaggaacaagcggacgtgatggtgagccaggaccgcca
ggattaccgggaccacagggaccaagaggacctactggacacgatggtgactccggccct
gctggaccaccaggaccaagaggagcccccggagcaccaggatacggtcagatgtgcgct
ggagctggtcccgcaccagttaaagcaggaagctacatgtatgatgaggcgtttagggaa
ctgccttcaaccttccttagaagcttgcaagattctattgaccgactttacgttcccgac
ggaacaaaaaaagcaccagccagagattgttctcacttgtaccacgcgcaagagtctgat
gaagctagagcaaaacttaaaaatggtatttacatgattgatcccgatggtggaaagttg
gagaatgctattccagcatactgtagatttgaatcaatggaaacatgcatacgaccagga
caggaagagttgacatggaaaacagtcgaacaattcataggtagtacaaaagaattttat
tataaggaaaagagacaattgcgtgtgttacaagaggtcagcgacagctcgaggcagaca
cttacttacaaatgtaggaatcacgacatcaatctcagcaccacctcatttgaaaccttc
ctcggctgtaatgtggacgctaacaagcgaaatggagctaagcctcgctatgtcgatgta
catgttgacgaggataactgcaatatgactggtgaatggggacagaaggtgttcaccctt
gaatccagaaaggctgaagctctgcctattttagatgtagacataaatgaaagtgatatt
aatggtagccaagcagagtttaaaatagtattaggagaggtctgcttccgagcctaa
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