Argopecten irradians (bay scallop): 138321680
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Entry
138321680 CDS
T10542
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138321680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138321680
03012 Translation factors [BR:
airr03012
]
138321680
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138321680
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138321680
Translation factors [BR:
airr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
138321680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
138321680
NCBI-ProteinID:
XP_069121640
LinkDB
All DBs
Position
1:24354941..24385795
Genome browser
AA seq
1119 aa
AA seq
DB search
MHVFQPLCRRLNLISLPVTATMSYGGEGRQPWRREGHGGRGRGRRYGHNSREGQEGDDDG
REGGGWHRGGGGYHRGGHRGRRWEGEDRDGGHRGQERRGRGGRGRPPPGLSGREIGMFYR
QKSLANAAKREKEMTPVVNLQGNMKHKIQNLLDDINTADNVKSQPSRSGASLDQDLSEPI
GRPSTSHDVGRNRQTFQRPNTAAGFSGSQRSSGARSHSSEKYSNSKVKLDNDGQRTVSSY
DPWSDTDSDKMETGAMGGNSSREINEEDLCEEMEEDYNEFDELPMDVEVMQNQKEARSYI
FEDEMDQGLTGLGSDPVLDKFLMKEADERKTNRHFIKMMDFRKKLPSYNKREAILEALET
HQCLVISGETGCGKTTQVPQFILDDCVSRGKGSQCKVICTQPRRISAISVAERVADERGQ
GLDGGDIGYSIRLERKLPRNQGSVLFCTTGILLKYLESDPCLNRVSHIVVDEIHERDLLS
DFLLIILKDLLPKRPNLKVILMSATLNAEQFSSYFNDCPMLHIPGFTYPVKEFWLEDAIQ
MTGYVLDESAQRKKPRFYNRKQAQQSQYELDERANWVKTLDTTKYSSSTKRTLLNMDTKE
VDIDLIHNIIHHICFEMDGDGAILVFVPGMTEIKDLNKSLVSTTTFNNRNFRIIPLHSLM
PTVNQREVFDRPPPGVRKIIIATNIAETSITIDDVVYVVDAGKIKIKDFEPESNLATLTS
QWVSKANTRQRRGRAGRVQEGVCFHLYTSQQQESLVDYQLPEILRTPLEELCLQIKLLKL
GMVEPFINKAMQQPSSQAVHSALTTLRDLKAIDEDENLLPLGHHLARLPVDPKSGKMILF
GAMFGCLDPICTIAASLSFKNAFVVPLGKEAQVDVVRSRLAEDSNSDHIMLVNAFKGWER
AKRRGTASQYCYQHFLSPSILQQLAEMKGQFAKLLHDRKFIDTWNASDPSVNINSNNENL
VKAIICAGLYPNVAKLKSSGRKPKHYKPMKLHLKGREFVYLHPSSVNKRNNDLNSAWFIY
HKKMKTEQVYLYDTSVVSPYSLLMFGGEIEASEEMVDDELRPKVTVDEWILFWTSLSTAQ
MVKDLRQQLDKILEEKIKHPGPTDWSKSSREGAIIVCHY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtattccaacctctctgtcgacgcctcaatctaatatcattgccagtaacagcc
acaatgagttacggaggtgaaggtcgacagccatggaggagagaaggccatggaggtcgg
ggacgtggaagaagatatggacataatagtagggagggtcaggaaggtgatgatgacgga
agagaaggaggaggatggcatagaggaggtggaggatatcaccgaggaggacatagagga
agaaggtgggaaggagaagacagagatggaggccacaggggacaagaacgaagaggcagg
ggaggtagaggtcgacccccacctggcttatctggcagagaaatcggcatgttttataga
cagaaatctttagctaatgctgctaaaagggaaaaagaaatgacaccagtggtaaacctt
caaggcaacatgaaacataagatacaaaatcttctggatgatatcaatacagccgacaat
gtcaagtctcaaccgtcacgatctggggcgtctctggaccaggatctgagtgaaccaatt
ggacggccatcaacatctcatgatgtgggcagaaaccgtcagacttttcagcgcccaaac
actgcagcaggattctctggtagccagaggtcatcaggggccagaagtcatagttcagag
aaatattcaaattctaaagtgaaattagataatgatggacagcggactgtgtcctcttat
gatccatggagtgatacagattcagacaaaatggagactggagccatgggaggtaactca
tcaagggagataaatgaggaggatttatgtgaggaaatggaggaggattataatgaattt
gacgagttgcctatggacgtggaggtcatgcaaaaccaaaaggaggctaggagttatatc
tttgaggatgaaatggaccagggattgactggattaggcagtgatccagtattagataaa
tttcttatgaaagaggcagacgaacgaaaaactaacagacattttatcaagatgatggat
tttaggaaaaaacttccttcctataacaaaagagaggcaatccttgaagccttggaaaca
caccagtgtttggttataagtggggagactggatgtggtaaaactacacaggtgcctcag
tttattttggatgactgtgtatcccgagggaaggggtcccagtgtaaagtgatctgtaca
cagccaagaaggatcagtgcaatatcagtagcagaacgagtggctgatgaacgaggccag
ggcttagatggaggagacattggctactctatcagactagaaagaaagttaccaaggaat
cagggatcggtactgttctgtaccacgggcatactgttaaaatacctagagtcagatccg
tgcctgaaccgagtcagtcacattgttgtagacgagatacacgagagagaccttttgtct
gactttctactcatcattctcaaagaccttcttccaaaacggccaaatctcaaggtcatt
ctgatgagtgcgaccttgaatgctgaacagttctcaagttacttcaacgactgccctatg
cttcacatccctgggtttacataccccgtcaaggagttctggttagaggacgccatacag
atgacaggttatgtgcttgatgaatcagctcagagaaagaaacctagattttacaacagg
aaacaggcccagcagtctcagtatgaattagatgaaagggcgaactgggtgaaaacgctg
gacacgacaaagtactcatcttcaacaaagaggacgttactaaatatggacacaaaagaa
gttgatattgatctcatccacaacattattcatcacatctgttttgaaatggatggtgat
ggggccattttagtatttgtccctggaatgacagaaataaaagatctgaacaaaagttta
gtcagtacaacaaccttcaacaatcgtaatttccggattatcccgctccactcccttatg
ccgacagttaatcagagagaggtctttgatagaccgccaccgggagtaaggaaaattatc
atcgctaccaacatagcagagaccagtatcactattgacgacgttgtttatgtggtggat
gctgggaagatcaagataaaggattttgagccggagtctaacctagccacactaacatcc
cagtgggtgtctaaggccaacacccgacagagacgaggccgagctggacgtgtccaggag
ggagtgtgtttccatttgtacaccagccaacaacaagaatctttagtcgactaccagcta
cctgagattttacgtactccactggaggaactatgtcttcaaataaagcttttaaaactt
ggaatggtagagccatttattaacaaggcaatgcaacagccttcatcccaggctgtgcat
tctgcactgaccacactacgagacttgaaagccatagatgaagacgaaaacctgctcccc
ctcggccaccacctcgcccggttacctgtcgaccctaaatctggcaagatgatcctattt
ggtgccatgtttggctgtcttgatcccatctgtaccattgctgctagtctcagctttaaa
aatgcatttgtggtgcccttggggaaggaagctcaagtagacgtggtgagatcacgtctg
gctgaagatagtaacagtgatcacattatgctcgtcaacgcattcaagggctgggagcga
gccaaacgaagaggaacagcatcacagtactgttaccaacacttcctgtctccaagtata
ctccaacaactcgctgagatgaaaggacaatttgcaaaattattacatgatcgtaaattc
attgatacctggaatgcctccgacccttctgttaacatcaattccaataatgaaaaccta
gtgaaagccatcatatgtgctggattataccccaatgtagccaagttaaaatcctctggt
cgcaaaccaaaacattacaagcctatgaagctacacctaaaaggtcgagagtttgtttat
cttcatccttcttctgtaaacaaaagaaacaacgatttaaactcagcatggttcatctat
cacaagaaaatgaaaactgagcaggtgtatctatacgataccagtgtagtgtccccctac
tcacttctcatgtttggaggcgagattgaagcatcagaagaaatggtggatgacgaactg
aggccaaaagttacagtggatgaatggatcttattttggaccagtttatcaacagctcag
atggtcaaggatcttcgacaacagttagacaaaatattggaggaaaagatcaaacatccg
ggaccaacagactggtccaaaagtagcagggagggtgccattattgtctgccattactga
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