Argopecten irradians (bay scallop): 138321857
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Entry
138321857 CDS
T10542
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138321857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138321857
03041 Spliceosome [BR:
airr03041
]
138321857
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138321857
Spliceosome [BR:
airr03041
]
Complex B
Other components
Prp19-related factors
138321857
Complex C
138321857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_12
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
138321857
NCBI-ProteinID:
XP_069121956
LinkDB
All DBs
Position
4:47984901..48004016
Genome browser
AA seq
848 aa
AA seq
DB search
MIMPEKKDTQNDIFFEDEDLPYEEDILRNPFSVKCWLRYIEHKKGANKNAINLVYERALK
ELPGSYKLWYNYLKIRRRQCKGHCITEPLYEDTNNAHERALVFMNKMPRIWLDYCQFLVD
QCKITKTRRTFDRALRALPISQHHRIWPVYLKFVCKYDLQETTVRVYRRHLKLQKENTED
YIDYLKSIEWLDEAATRLVNIINDDTFVSKEGKSKHQLWNELCELVAKNPDKVTSLKIEP
IIRQGLKRYTDQIGVLWNAWPDYYIRGGHFERARDIYEEAIQTVITVRDFTQVFEAYAQF
EKNLIGAEMETMEEKGASEEDYLSLYVDIPIIDYLFNNFLYLSVLLRQNPHNVHEWHKRV
KLYEGKPREIINTYTEAVQTVDPKQASGKPGTLWVEFAKFYEAAGQIEDARVIFDKAVKV
PYKHVDDLATVTCEWGEMEIRHENYEEALKLMQKTTVPPSRKVAYHDENETVQDRVHKSL
KVWSMYADLEESFGTFKTCKAVYDRIIDLRIATPQIIMNYGLFLEENNYFEEAFKAYEKG
IALFKWPNVYDIWNTYLSKFIERYGGSKLERARDLFEQCLENCPPKFAKAIFLLYAKLEE
EHGLARHAMAVYDRATKGVLPEEQAEMFNVYIKRAAEIYGVTYTRPIYEKAIEVLPDEQS
REMCMRFADLERKLGEIDRARALYSHCTQMCDPRVAPHFWQVWKEFEIKHGNEDTVREML
RIKRSIQAMYNTQVNFMSSQIMAAQTGGKTGAPEDSNPEVDSMKKLEERARQLAEEAVKD
QAKPDKGILFVRSNATDEELGEMTKTANPDAIDIDDFSSDEDENIEELEVQKQSVPSEVF
GSLATEES
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgataatgccagagaaaaaagatacacagaatgatattttcttcgaggatgaagatctc
ccttacgaagaagacattttgcgtaatccgttctcagtaaaatgctggttacggtatatt
gaacacaagaaaggagccaataaaaatgccatcaatttggtatatgagagagctttaaaa
gaacttccagggagctacaagctgtggtacaactaccttaagatcagacgtcgccagtgt
aaaggccattgcatcacagaaccattgtatgaagatacgaacaacgctcatgaacgtgcc
ctggtgttcatgaataagatgcccaggatttggctggattattgtcagtttctggttgac
cagtgcaaaataactaagactcgtcggacatttgacagagccctgagagcactccccata
tcacagcaccacagaatctggccagtctatctcaagtttgtgtgtaaatacgacctccag
gagaccacggtccgcgtatatagacgacatttgaagctccagaaagaaaacacagaggat
tacattgactaccttaaatccatcgagtggctagatgaggcagcaacacgtttggtcaat
atcatcaacgatgatacatttgtgtccaaagagggcaaatccaaacatcagttatggaat
gagctctgtgaattggtagccaaaaatccagacaaggtgacatcgctgaagatagagccc
atcatccgacaaggcttgaagcgttacacggaccagataggtgtcctctggaatgcatgg
cccgactactacatcagaggtggacattttgaacgggctagagacatctatgaggaagcc
atccagacagtgatcacagtacgagatttcacacaggtctttgaagcctacgctcaattc
gaaaaaaatctgattggtgcagaaatggagacaatggaggagaaaggagcctctgaggaa
gactatttatccttgtatgtggatattcctatcattgattatttgtttaataattttcta
tatcttagtgtgctattacgacaaaacccacacaatgtacacgaatggcataaaagggtg
aaactttacgagggcaagccaagggagatcatcaacacctacacagaagcagttcagaca
gttgacccaaaacaggcgtcgggtaaacctgggacgctgtgggtagaatttgctaagttt
tacgaggcagccgggcagatagaagatgcccgtgtgatatttgacaaggctgtcaaggta
ccttacaaacatgtggacgacctggccaccgtcacctgtgaatggggcgagatggagatc
cggcatgagaactatgaagaggccctaaagctgatgcagaaaacgacagtacctccatct
cggaaagtggcatatcacgatgagaacgagaccgtacaggatcgggtccataaatctctc
aaagtctggtctatgtatgcagatctggaggaaagctttggaacattcaagacctgtaaa
gctgtgtacgacagaatcattgatctacggatagccactccccagatcataatgaactac
ggcctgttcctggaggaaaacaattactttgaggaggctttcaaggcttatgaaaaggga
attgcattatttaagtggcctaatgtctatgacatttggaacacatacttatccaagttt
attgaaagatatggaggatcaaagcttgagagagccagggacctatttgagcaatgtctt
gaaaattgcccaccaaaatttgccaaagccatatttctcctgtatgccaagttggaagag
gagcatggactggcccggcatgccatggctgtgtatgatcgagccactaaaggggtgtta
ccagaagagcaggcagagatgtttaatgtgtatataaagagagcggcggagatatacggg
gtcacctatactcgacctatctatgaaaaggccatagaagtcctaccagatgaacagtct
agagaaatgtgtatgaggtttgctgatctggagagaaaacttggagaaattgacagagca
agggcgctctactctcactgtacccagatgtgtgacccaagggtagcaccgcacttctgg
caggtatggaaggaatttgagatcaaacatggaaacgaggatactgtccgagaaatgctc
aggatcaaacgtagtatacaggccatgtacaacacacaggttaactttatgtcgtcacaa
attatggcagctcaaactggagggaagacaggagcaccagaagactccaatccagaggtg
gatagcatgaagaaattagaggagcgagcccgacagctggcagaggaggcagtcaaggac
caggctaaaccagacaagggcatcttatttgttaggagtaatgctacagatgaagaactg
ggcgagatgacgaagacggctaatccagatgccattgatattgatgacttctctagtgat
gaagacgaaaatattgaagaattggaggttcaaaagcaatctgttccctctgaagtattt
gggtcattggccacggaagagagctga
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