Argopecten irradians (bay scallop): 138322685
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Entry
138322685 CDS
T10542
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138322685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
airr03041
]
138322685
Spliceosome [BR:
airr03041
]
Complex B
Other components
Prp19-related factors
138322685
Complex C
138322685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
RRM_YTH1
Nup35_RRM_2
RRM_occluded
zf-CCCH_2
zf-CCCH_4
zf-CCCH
RRM_3
zf-CCCH_10
RRM_PARP14_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
138322685
NCBI-ProteinID:
XP_069122820
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All DBs
Position
5:4258437..4279592
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AA seq
434 aa
AA seq
DB search
MAASKGANTYNRQNWEESDFPILCQTCLGDNPYIRMMKEKYGKECKICARPFTVFRWCPG
ARMRFKKTEVCQTCSKIKNVCQTCLLDLEYGLPVQVRDAALKIQDNMPKSDVNKEYYTQN
MENEIANSDGTVAPGQLGKAQTPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHDKPTDPDDPLADQNIKDRFYGMNDPVADKLMNRYSNMPKLDAPEDKSITTLYVGNLG
DKIGEQELRDHFYQFGEIRSINIASKQQCAFVQFTTRQAAENATEKSFNKLIMGGRRLNI
KWGKSQAQLGVTKKDGDESEKALEPVPGLPGALPPPPEEIANNFFNLPNAPNHMPMPPGP
PRGMPPRLIPPGAHMMPFGMFRGPPPPGVRLPPPPPGMMPMRPPPRVMMGNNMPVHYPSQ
DPTRMGAVTTSSKS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttctaaaggagcgaatacgtacaatcgacagaactgggaagaatcggatttc
ccaatattatgccagacatgtcttggggacaacccatatatacgcatgatgaaggagaag
tatggaaaggagtgtaaaatctgtgcacgtccctttacagtgttcagatggtgtcctggg
gcacgtatgaggtttaagaagacagaagtttgccagacatgttcaaagatcaaaaatgtc
tgccaaacttgtcttttagatcttgaatatggtttacctgtacaggtgagagatgcagct
ctgaagatccaggacaacatgccaaagtcagatgtaaacaaagaatactacacacagaac
atggaaaatgagattgccaatagtgatggtacagttgcccctggacagttgggtaaagct
cagacacctagtgatatgttactaaaactggcccgcaccacaccctactacaaacggaac
agaccacacatctgctccttttgggtgaagggagaatgtaagaggggagaggagtgtcca
tacagacatgacaagcccacagatccagatgaccctctggcagaccagaacatcaaggac
agattctacgggatgaatgacccagtggcagacaaactaatgaaccggtacagcaatatg
ccaaagttagatgccccggaagataaatccatcacaactttgtatgtgggaaatctcggg
gacaaaataggggaacaagaactcagggaccacttctaccagtttggtgagatcagatct
atcaacatcgccagtaagcagcagtgtgcatttgtacagtttacaacacgacaggcagct
gagaacgccacagagaagtcatttaataaactgatcatgggaggtagacgtctaaacatc
aagtggggtaaatctcaagctcagcttggagtcacaaagaaagatggagatgaatcagaa
aaggcacttgaaccggtcccaggcctacctggagctttgcctcctccaccagaagaaatt
gctaataatttctttaacctgcccaatgcacctaaccacatgccgatgccgccaggaccc
cctagaggaatgccaccccgtctcatacctcctggtgctcacatgatgccatttggcatg
ttccgtggacctccacctccaggtgtgagactacctcccccacccccagggatgatgcca
atgcgcccgccccccagagtgatgatgggtaacaacatgccagtacattacccctctcag
gatcctaccaggatgggagctgtcactaccagcagcaagtcgtaa
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