Argopecten irradians (bay scallop): 138323302
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Entry
138323302 CDS
T10542
Name
(RefSeq) ATP-dependent DNA helicase Q1-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138323302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138323302
03400 DNA repair and recombination proteins [BR:
airr03400
]
138323302
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
138323302
Messenger RNA biogenesis [BR:
airr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
138323302
DNA repair and recombination proteins [BR:
airr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
138323302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_14
Motif
Other DBs
NCBI-GeneID:
138323302
NCBI-ProteinID:
XP_069123906
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All DBs
Position
5:24188130..24191399
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AA seq
461 aa
AA seq
DB search
MADFDTCISFAKQAIGFGHTLKDKQLQSLKKLYNGNDVISVLPTGYGKSIIFQLLPWFFQ
RQHNLPLPGIVIVICPLNSIIQDQVISLRSKGIPACYLSGSSAKTFEREECASDEESEVD
NDLTMTDTDFEDLAKGRYNIIYSHPESILNKKFYRLLRTKLYKDRVCCVVVDEVHMIAEW
GEEFRPMFKKLGDLTCLFDSSPHLAVTATASPSSILDLAKTLQYQDHATVTMNPDRSNIY
IEVKPRLPNSRKTDKFDELIDPLSCELKSKLLAFPVTIVYVENLEALGYYYQYLNSTLGE
LQYAPISNKIPEGRIFAQYHTEYTADMKTHILRELQKDNPHIRLVVATVALGMGLDSPSI
TRVIHCRPPTSLEKYLQEIGRAGRAGQKATAIMYHNKSDIAKNRTGMTAEMVKFCNNVDS
CLRLQLVKYFGFQTTTFEGPMDECCSNCRQSLLSAVESVNI
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggccgactttgatacatgcattagctttgcgaagcaagcgataggttttgggcacact
ttgaaagataaacaacttcagtcattgaagaaattgtataacgggaatgatgtgattagc
gttctgcctacaggctatggaaagagcataattttccaactgcttccttggtttttccag
agacaacacaatttaccgttaccaggaatagtaatcgttatttgtcccttaaatagtatt
attcaggaccaagttatatcattacgaagcaagggtattccggcatgctatctatcgggg
tcatctgctaagacttttgagagagaagagtgtgcaagtgacgaagagagtgaggttgac
aatgacttgacaatgacagataccgactttgaagatttggccaaaggacgttacaacata
atttattcacatcctgaatctatcctcaacaagaaattttacagattacttaggacgaaa
ttgtacaaagaccgggtgtgctgtgttgttgtggatgaagtgcacatgattgcagaatgg
ggtgaagaatttcggccaatgttcaagaagttaggagatttgacctgcttatttgacagt
tctcctcatctagctgttactgcaacagcatccccatcttccatccttgatttggcaaaa
acccttcagtatcaggaccatgcgactgtgacaatgaacccagacagatcaaacatatac
atagaagtaaagccacgactcccaaactccagaaaaactgacaaatttgacgaactgatt
gatccgctatcctgtgaattaaaatccaaactactagcctttcctgtcactatagtttat
gttgaaaatttggaagctcttgggtactactaccagtatttgaactccactcttggtgaa
ttacagtatgctcctatttcgaacaaaataccagaaggaagaatatttgcacaataccac
acagaatacactgcagacatgaaaacgcacatacttagagaacttcagaaagataatcca
cacattcgtcttgttgtagctactgttgcacttggtatgggtttagactcgccaagcatc
acacgtgttattcactgtagacctccaacatcgcttgagaaatacttgcaggaaataggt
agagctggaagggcaggtcaaaaggccacagccattatgtaccataataaaagtgacatt
gctaaaaaccgaaccgggatgactgcagaaatggttaagttctgtaataatgttgacagt
tgtcttagacttcagcttgttaaatatttcggtttccagacaaccacatttgaaggtcca
atggatgaatgttgttccaactgccgccaatcattgttgagtgctgtagaaagtgttaac
atatag
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