Argopecten irradians (bay scallop): 138324053
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Entry
138324053 CDS
T10542
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138324053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138324053
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138324053
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138324053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Prefoldin_2
PI3K_P85_iSH2
EspB_PPE
DUF948
GapR_DNA-bd
PilJ
DUF1664
Motif
Other DBs
NCBI-GeneID:
138324053
NCBI-ProteinID:
XP_069125160
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Position
5:46753649..46773993
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AA seq
711 aa
AA seq
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MADRRKLQGEIDRCLKKVGEGVETFEDIWNKISLQVHNAANTNQKEKYEADLKREIKKLQ
RLRDQIKTWCASSDIKDKRILVENRKLIETQMERFKIVERETKTKAYSKEGLGAAAKMDP
IAKEKGEVANWLSTTIETLQKQLEQFESRIEQLSSKKKKMDKDTQDQYEELRAAQDRHKF
HIKKLETIMRMVDNDALPLDQIKKIKDDVEYYLEYNQEPDFEENEFLYDDLDLDDLGSQV
LASSPPNDDSILDKLSSTPTSTNSSSPSPSPSLSMNHSKDKFEEMDRKRHKSQNEDKQKV
TVIVTSSMSSPSSTNSSSLSVTVNKVPTTPTKMFPGNSITNAESNHRPSSTPPLTAYNVA
AAGSQQNNSAETKNQAPLDHINSTISSVPVTSNSTITNSVSSTGNPVLPAVPIPMISNSV
MSTSPNTIVSNSATSSSLMTFQPNSVSVKPEMQVVMNGPLSAVGPLLKGVTENDIESMSS
LKSIAQQAVLDAGLENKIPTTHTTTLDARVHAPFNNSTSTSSQVAAPQATSPSPSSSSDQ
SQQAQTTTIHLNPLLGVAPLGPVPLTREHYYQLTMLEAAHHHFPHPSDSERIRHYLPRNP
CPTPSYYPQLSPPHTDSVDYFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKY
MMWFQRHEEPKTITEDFEQGTYIYFDYEKWAQRKKEGFTFEYRYLEDRDLN
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggctgataggcgaaagctacaaggagaaattgacagatgtctaaagaaagtgggtgaa
ggagtagaaacctttgaagacatctggaataagatatccttgcaggtgcataatgctgcg
aacacaaatcaaaaagagaaatatgaagctgatcttaagcgtgagattaaaaagcttcag
cggttacgggaccagattaaaacatggtgtgccagtagtgacatcaaagacaaacgaata
ctggtggaaaaccggaagcttattgaaactcaaatggagaggttcaagattgttgaaaga
gagacgaaaacaaaagcctattcaaaggaaggcttaggggctgctgcaaaaatggatcct
atcgcaaaagaaaaaggagaagtggcaaactggctttcaacgactatcgagaccttacag
aaacaacttgagcaatttgaaagtcgaatagagcagctgtcatctaaaaagaagaagatg
gacaaagatacacaagatcagtatgaggaactacgggcggcacaagatcgacacaagttc
catataaagaagttagaaacaatcatgaggatggtggacaatgacgcgctaccgttagac
caaattaaaaagatcaaagatgacgtggaatactatctggaatataaccaagaacctgat
tttgaggagaacgaatttctatatgatgatttagatcttgacgatctaggttcacaagtg
ctggcttcatcgccacctaacgatgatagtatattggataaattatcgagtacgccaaca
tcaaccaactccagttctccttcacctagtcctagtctttcgatgaatcattccaaggac
aagtttgaagagatggacaggaaaaggcacaaatcccaaaatgaagacaaacaaaaagta
acggtaattgtaacatcgtccatgtcatcaccttcatcaaccaactcatcctcattaagt
gtaactgtcaacaaagtacctaccactcctacaaagatgtttccagggaattcaattacc
aacgcagaaagcaatcatcgtccaagttcaacaccaccgttgacagcatacaatgttgca
gccgcagggtcccagcaaaacaatagtgcagaaacaaagaatcaagccccacttgaccat
attaattctacaataagtagtgtgccagtcacgtcaaactcaacaataacgaactctgtc
tcttcaactggaaatcccgtcttaccagctgtaccaatccctatgatatcaaacagtgtt
atgtcaacgtcgcccaacacgatagtgtcaaatagtgcaacaagtagttccttaatgact
tttcaacccaactcagtgtcggtcaaacctgagatgcaagttgtaatgaatggaccgctt
agtgctgtggggccattattaaaaggtgttacagagaatgatattgagtctatgtcgtca
ttaaagtcaatagcgcaacaggctgtgttagatgcgggtctagaaaacaagattcctaca
acgcacacaacaacattagatgcaagagtacatgcaccattcaacaattcaacatctacg
tcatctcaggtggcagcacctcaggccacctctccatcaccatcatcgtcttcagaccag
tcacagcaagcacagaccacgacaatacacctcaatcctctattaggtgtggcacccctg
ggccctgtgccactcaccagggagcactactaccaactaaccatgttagaagcagcacat
caccactttccacacccgtcagactcggaaagaatccgacattacttaccacgtaatccc
tgcccgactccttcatattacccacaactctctccaccacatacagactctgtggattat
tttcaacgattatcaacagaatcattattctttattttctactatatggagggtacaaag
gctcaatatctggcagcaaaagctcttaaaaagcagtcgtggcggtttcatacgaagtat
atgatgtggtttcagcgacacgaagaaccaaagacaataacagaagactttgaacagggc
acatatatctactttgattacgagaaatgggcccagagaaaaaaagaaggatttaccttt
gaataccggtatttggaggatcgagatttgaactaa
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