Argopecten irradians (bay scallop): 138324907
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Entry
138324907 CDS
T10542
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138324907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138324907
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138324907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
138324907
NCBI-ProteinID:
XP_069126241
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All DBs
Position
6:8862143..8884203
Genome browser
AA seq
725 aa
AA seq
DB search
MARHRNVRTMNYEDECYDDDDYLGHSVEDNYCISPGTAAQFTFNREKDFDLSNYMGNEKI
PEEEEGFDSDTDAPSLNDSQGYKKPDLSDVEQAKLNSCLEEIRNILGDSTPDHILYQTII
KNKFDLQASLNELLKTDDAPKPQRQPRQNRRNRSQDFAPNPPTVELKTPVKKQPSPVKPE
QDTATAVSQISIKNDKVPVSWLEPNVTEATPSKASGDVRTDNDKDIPDGAPSQKAAESLV
GYSDRTPVQTPKKEASTPQVTKSASKSKQDKARLKEEYDRRQGDKELLNMVVIGHVDAGK
STLMGHLLFQLGMVNKKAMHKYEQESKKVGKGSFAFAWVLDETEEERSRGVTMDIAQTKF
ETPKKAVTLLDAPGHKDFIPNMITGTAQADVGILVVNAARGEFETGFETGGQTREHALLA
RSLGVSQLIVAVNKMDTVKWSQERYDEVTKKLGSFLKTAGYRDTDISYIPCSGLSGENLA
KAVSEPQLSAWYRGSTLVEQIDKFKTVTRQLDKPLRLTVGDVFKGMGAGFSVTGRVGAGS
VQTGDKVQVMPYGEMATVKGVMLGDLSAMCAFAGDHVTLTLTGIDMTNVSLGSVVCDPAN
PIHCATRIRARVVLFNLEIPVTKGFMVVFHYQSITEPAVIKRLVSQLNKSSGEILKNKPK
CLTKNSSAVIEIEFERPVCLELYKDFKDLGRFMLRYSGSTIAAGLVEEILKSKMKADDTQ
GASAY
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatagaaatgttcggactatgaactacgaagatgagtgttatgatgatgac
gactacctgggacactctgtggaagacaactactgtatttctcctggcactgcggcccag
tttacttttaatcgtgagaaagactttgacctctctaactacatgggtaatgagaagatc
cccgaggaggaagaaggatttgacagcgacacagatgcaccatctcttaatgactcccag
ggctacaaaaaaccagatctcagtgacgtggaacaagctaagttgaattcttgtttagaa
gaaatacgcaatattcttggtgatagcactccagaccacatcctgtatcagacaatcatc
aaaaacaaattcgacttacaagccagtctcaacgaattacttaaaacagatgatgcccct
aaaccacagagacagccgagacaaaatcggcggaacagatcacaagattttgcacccaac
cccccaacagtagaacttaagacgccagtgaagaaacagccgtcacctgtaaaacctgag
caagatacagcgacagctgtatcccaaattagtattaaaaatgataaagtacctgtgagt
tggttggagcccaatgtgaccgaggccacgccctcgaaggccagtggtgatgtaaggacg
gataatgataaggacattcccgatggggccccgtcacagaaagccgcggagtctttggtc
ggttactctgataggacacctgtacagactccaaagaaagaggcatcaacacctcaggtg
acgaagagtgcatcaaagtcaaagcaggataaggcgagattaaaagaagaatacgacaga
cggcagggagacaaagagcttctcaacatggtcgttataggccatgttgacgctgggaag
agtaccctgatgggccatttgttattccagttaggcatggttaacaaaaaggcaatgcat
aaatatgaacaggaatctaagaaggttggtaaaggctccttcgccttcgcctgggtgctg
gacgagaccgaggaggagagatctcgtggtgttaccatggatattgctcagacaaagttt
gaaactccaaagaaagctgtaactctgttggacgctccaggacacaaagactttatcccc
aatatgataacagggacagcccaggctgatgttggtatcctggtagtgaacgctgcccgc
ggggagtttgagactggctttgagacgggcggtcagactagagaacacgcactactggcc
agatcattgggtgtgtcacagttaattgtagcggtaaataaaatggacacagtcaaatgg
tcacaggagaggtatgacgaggtgacaaagaaactcggatctttcctgaagacagcggga
taccgagatacggacatatcctacatcccgtgtagtggtctaagtggagaaaacctggcc
aaggccgtgtctgagcctcagctttccgcctggtatcggggaagcacgctggtggaacag
atagataagtttaagacggtgacccgtcagttggacaagcccttacgtctgactgtaggg
gacgtattcaaagggatgggagccgggttcagtgtgactggccgagtaggagccgggtca
gtccagacaggggataaggtccaggtcatgccgtacggggaaatggccactgtcaaaggt
gtgatgttaggagacctgtcggcaatgtgtgcattcgctggggaccatgtgaccttgact
ttaacgggcattgacatgaccaacgtcagtttaggaagtgtagtttgtgatccagccaat
ccaatccactgtgccacgaggatccgtgctagagttgtgctatttaacttagaaattcct
gttaccaaaggatttatggttgtgttccactaccaatccattactgaaccggccgtcatc
aaacggctggttagtcagctcaacaaaagttcaggagagattctaaaaaacaaaccaaag
tgtctaacaaagaactccagtgctgtgatagagatcgagtttgagcgaccagtctgtctt
gagctgtataaagattttaaagaccttgggagattcatgttgcggtatagtggttctaca
atagcggccggtttggtggaagagatcctaaaaagcaaaatgaaagcagacgacacacaa
ggtgcttcagcatactga
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