Argopecten irradians (bay scallop): 138325501
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Entry
138325501 CDS
T10542
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138325501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138325501
03041 Spliceosome [BR:
airr03041
]
138325501
03009 Ribosome biogenesis [BR:
airr03009
]
138325501
03016 Transfer RNA biogenesis [BR:
airr03016
]
138325501
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138325501
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138325501
Spliceosome [BR:
airr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138325501
Complex C
U4/U6.U5 tri-SnRNP related factors
138325501
Ribosome biogenesis [BR:
airr03009
]
Eukaryotic type
Pre-60S particles
Helicases
138325501
Transfer RNA biogenesis [BR:
airr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138325501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
138325501
NCBI-ProteinID:
XP_069127297
LinkDB
All DBs
Position
6:27365659..27389234
Genome browser
AA seq
1030 aa
AA seq
DB search
MADAFGDDLFNVFEDKGEAATIDTGDEGRPEEKNDSKKTDAQRTEELFKSIVGKRTADEE
ENENNPTKKVKAIPQDLEPTDVMPRIQIHRVETVEACQHEVAIPPEAEFVPLKAASAQPA
KEYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTTPIKA
LSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILLSMLYRGSEIMREVGWVVFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYRP
TPLQHYIFPSGGDGIHLVVDENGEFREENFNTAMSVLRDAGDASKGDRWGRRGGAKGNET
NCFKIVKMIMERSFAPVIVFSFSKKDCEAYAMQMSKLDFNTDEEKSLVEEVFNNAIDNLS
DEDKKLPQVEHVLPLLRKGVGIHHSGLLPLLKETVEILFSEGLIKALFATETFAMGLNMP
ARTVLFTSARKFDGKDFRWLTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPQAGKTVV
KGEADSLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLCEKLKKLEEDY
ANVQVPNEEQVGPYYKIRQQLDNLGKELLGYIQKPQYLLPFLQPGRVIKVKNGDDDFGWG
VLINLQKKSNQKKSVEVTEPVYVAEVLLNLTKESARTRNIASIQPCPKGSRGEMQVVPVI
TNLIQSVSAVRLYIPQDLRPSDNRQSVSKSLQEVERRFPDGIPLLDPVEDMGIKEKGLKE
IVKKIEAFEHRMYSHPLHKDPRLEEYYKEYEKKAKVGNDVKAIKLELKKKKSLLQMDELK
CRKRVLRRLGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTTQQVCALMSCF
VFQEKSNEMPKLTEALSGPLRIMQDTARRIARVSREAKIDVDEEQYVDSFKPHMMDIVNA
WCNGATFAEICKMSDIFEGSIIRCMRRLEETLRQMCQAAKAIGNTELENKFAESIRCIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcctttggcgatgatctcttcaatgtatttgaagacaagggagaggcagcc
acgatcgataccggcgacgaaggacgtcctgaggaaaaaaacgattctaaaaagactgac
gcacagcgaactgaagaattatttaagagcattgttggtaaaagaactgctgacgaggag
gaaaatgaaaataatccaacaaaaaaagtcaaggcaattccacaggaccttgaacctaca
gatgttatgccaaggatccagatccacagggtagagactgtagaagcctgtcaacatgag
gtcgcaattccacccgaagcagagttcgttcccctgaaggcagcatcagcccaacctgcc
aaggaatatccattcatccttgaccccttccagaaggaggctctgttatgtctagagaac
aaccaatcagtgctggtgtcagctcatacctcagcaggaaagacagtggtggctgtgtat
gctatcgctatgtccttaagagacaaacagcgagttatttacaccacaccgattaaggct
ctcagtaaccagaagtaccgtgagctgttcgaggagtttcaggacgttgggctcatgacc
ggtgacgtcacaatcaaccccactgctagttgtcttgttatgacaacagagattctgctg
agtatgttgtacagaggatcagaaatcatgagagaagtcggctgggttgtgtttgatgaa
attcattacatgagagataaagagagaggtgtggtctgggaggagacgattatcctacta
cctgataacgtccattacgtgttcctgtctgctaccatccctaacgctcgtcagtttgct
gagtggatctgtcatctacacaaacagccatgtcatgtggtatatacagaataccgaccc
acacccctccaacactacatatttccatctgggggcgatggtattcatttggtcgtggac
gaaaatggtgaattccgagaagagaatttcaacacagctatgtcagtattacgagatgct
ggcgatgcttcaaagggagataggtggggacgtcgagggggagcaaaaggcaacgaaaca
aactgctttaagatagtgaagatgattatggagcggagctttgcgcctgtcatcgtgttc
agtttcagtaaaaaggattgtgaggcatacgccatgcagatgtcaaagcttgactttaat
actgatgaagaaaaatcattagtagaagaggtatttaacaatgctatagacaacttgtct
gacgaggacaaaaaactaccccaggtggagcatgtgctgcctctattaaggaagggtgtg
ggtatccatcactctggtctactgcccctactcaaggaaactgtagaaatcctcttctca
gaaggactaattaaggcactgtttgctacagagacatttgctatgggactcaacatgccc
gccaggacagtgctgttcactagtgctaggaagtttgatggcaaagacttcagatggttg
acatcaggagagtacatccagatgagtggtcgagctggacgtagaggtcttgatgaccga
ggaatcgtcatccttatggtggatgaaaaaatgagccctcaagcaggaaaaactgttgtt
aagggtgaggccgactctctgaactccgccttccatttaacctacaacatggtgctcaat
ttgttacgagtggaggagatcaatccggagtatatgttggaacgctccttctatcaattc
cagaactacgcagccattcctgatctctgtgagaagttgaagaagttggaggaggattat
gctaacgttcaggttcctaatgaagaacaggtcggaccttattataaaatacgacagcag
ttagataatctagggaaggaacttctagggtatatacagaaaccacagtatctactgccc
ttcttacagccaggccgagtcatcaaggtaaaaaatggagatgatgattttggctggggt
gtactcatcaacctgcagaagaaatcaaaccagaaaaagtctgtagaagtaactgaaccg
gtatatgtggccgaagttttactgaacctgacgaaggagagtgcccgtacacgtaacata
gcgtccatacagccctgtcctaaaggttcacgaggggaaatgcaggttgtgcctgtgata
acaaaccttatccagtccgtcagtgcggtaagactttacatccctcaagatctccgtcca
agtgacaacagacagagcgtgtccaaatctttacaggaagtggagaggcggtttcccgat
ggaattccgctactcgatcctgtagaggacatgggtatcaaggagaaaggtctcaaagaa
atagtcaagaaaattgaggcgtttgaacacagaatgtactcacacccgctccataaagat
cctcgcctggaagagtactacaaggaatatgagaagaaagcaaaggttggaaatgatgtg
aaggccattaaactggagctgaagaaaaagaagtcactcctccagatggacgaattgaag
tgccgcaagcgggtcctacggcgccttggttactgtaccgcctcagacgtaatagaactg
aagggacgtgtggcttgtgagatcagcagtggtgacgagttattactgacagagctcctc
ttcaatggtgtgtttaacgacctcacaacccagcaggtctgtgctctaatgagctgtttt
gtctttcaagaaaagtctaatgagatgcctaaactgaccgaggcattatctggtccactc
cgtatcatgcaggatactgcccgtcggattgcccgagtgagtcgtgaagcgaagattgat
gttgatgaagaacagtatgtggattcctttaagccccacatgatggacattgttaatgct
tggtgtaatggggccacattcgcagagatctgtaaaatgtctgacatattcgaaggcagt
ataatccgctgtatgcgacggttagaggaaacgctcagacagatgtgtcaggcagctaaa
gccatcggtaacacggaactggagaataagtttgctgaatcaatacgatgtataaagagg
gatattgtgttcgctgccagtctgtacttatga
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