Argopecten irradians (bay scallop): 138326064
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Entry
138326064 CDS
T10542
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138326064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
airr03021
]
138326064
03036 Chromosome and associated proteins [BR:
airr03036
]
138326064
Transcription machinery [BR:
airr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138326064
Chromosome and associated proteins [BR:
airr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
138326064
Chromatin remodeling factors
BAF complex
138326064
PBAF complex
138326064
GBAF(ncBAF) complex
138326064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
BRK
Bromodomain
HSA
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
138326064
NCBI-ProteinID:
XP_069128287
LinkDB
All DBs
Position
6:complement(45930592..45951430)
Genome browser
AA seq
1710 aa
AA seq
DB search
MAAGEDKMMPGPPPPVPGYPQQNQAQDNMQMIQKAMNQMEEKGLQEDPRYAQLMAMADRA
RSGMHPPGMSQGMSQGMPGGPQHHGMQGPRSQNQGQRMASSPSPGMAGHQGMPGSSHNMP
TGPQGMSGNPGMMPGGPQGMHSGQQGMPGPGGQGMGGGQPHRMGSMGPNQGMPNGSMGMT
GSSMPNPALGGPNMTAPPSGPPNMNLPQNMPNSSSSAGPNVSQTAAPPMSGGPNMGGYNM
PNQGGQGMASSTGSSPSMGGPGMNGPMSGNNTAMGNHGMAGGSSGGPMGHSMPMEEMRAM
SHGNGSSSLAPPNSRMDQDQNQQGQQNMPPNQSGGPSRYNFSTPQLTQLRGQIMAYKLLA
RNQSIPDNVRMAIEGKRQFGSGSRPMNESNQQRMPQQPPQPHMPSQGMHYSGGQSMPPGP
PSQTAQAGSQPRPQSQQAPQSAVQSVISMQQKQSRIAPVAKPQGLDPLEILNERENRIAS
RISSRIKELEYLPGVMEEDMKVKAMIEFRALRLLNFQRQLRSEVVAYMRKDTTLETALNT
KAYKRSKRQSLREARVTEKLEKQQKLEHEKRRRQKHQEYLNAVLQHAKDFKEFHRNVSAK
ISKLNKAVMVHHANTEREQKKEQERLEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLHQ
TDEYITNLMSLVSAHKEDIKKKKQARKNKKKKEPGDHPDNPDESSNMSEPRISVIETNTG
KVLSGEDAPMSTQLEAWLEMHPGYEVAPREDGEEDDEEEEEEEEEHEEILPPPPPPAVNR
PNIQSVDDLAEHEATEIIQTAASRLDDDEYHNQVEMRNYYNVAHTVHETVTEQASIMING
KLKHYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMETKRINGPFLIIVPL
STLSNWLMEIEKWAPSVITISYKGSPVTRRAIAPQLKMGKFNVLLTTYEYIIKDKSVLAK
LRWKYMIIDEGHRMKNHHCKLTQVLNTHYCAPHRLLLTGTPLQNKLPELWALLNFLLPSI
FKCCTTFEQWFNAPFAMTGEKVELNQEETLLIIRRLHKVLRPFLLRRLKKEVESQLPDKV
EYVIKCEMSALQRVVYRHMQSRGILLTDGSEKDKKGRGGAKTMMNTIMQLRKICNHPFMF
QHLEEAFAEHQGLSTNVVQGPELYRAAGKFELLDRMFPKLKATGHRVLLFCQMTSLMSIM
EDYFVYRGYRYLRLDGTTKADDRGQLLNVFNCADSPYFVFLLSTRAGGLGLNLQAADTVI
IYDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNVDEKVIQAG
MFDNKSTGTERRQFLTTLLLQENDEAEEEDEVPDDETINQMLARTEEEFDLYQKMDIERR
REEARNPNRKPRLMEQDELPGWIVKDEAEVERLTFEDEEDKMFGRGSRQRKEVDYSDSLT
EKQWLKAIEDGNLEEVEEQVKRVPTSEKKKTKKRKIAVVDDDDDKKPKKKRGRPPVEKLP
PNPPKLTKMMKKLLDVIIHYKDNDGRVLSDAFFQLPSKKELPEYYEIIIKPVDFKKIKAR
IRDHKYRSIDDLESDVLTLCENAQSYNIEGSLIYEDSIVLQSVFTNARERLEKDGFNVSS
DESASSEGEEEDENGDEDDEEVIKVKGKSKESSKKSGSARKQRKSRGKSRVVISDDEEDG
EEEDQSEEETAPSSRSSSRVSSPAPGRRQR
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaggggaagacaagatgatgcctggccctccgccccctgttccaggctaccca
caacaaaatcaggctcaagataacatgcagatgattcagaaggcaatgaatcagatggaa
gaaaaaggtttacaagaagatccaaggtatgcccaactgatggcgatggcagatcgagct
agatctggtatgcaccctccaggaatgtcacaaggaatgtcacaaggaatgccaggcgga
ccacagcaccacggcatgcagggtcctcgatctcagaaccaaggccagagaatggctagc
tcgccatcacctggtatggcaggtcatcaaggaatgccaggctcttcacacaacatgccc
accggcccacaggggatgtctggtaacccaggaatgatgcctggtggaccacaaggcatg
cattctggccaacaaggcatgccggggccaggaggtcagggcatgggtggaggtcagccg
cacaggatgggaagcatgggaccaaaccagggcatgcctaatgggtctatgggaatgact
ggttcaagcatgcctaaccctgcactaggaggaccaaacatgacagctccccctagtggg
ccacccaacatgaatttgcctcaaaacatgccaaatagttccagtagtgctgggccaaat
gttagtcagacagcagcgcctcccatgtctggtggtccaaacatgggcggatacaacatg
ccaaatcagggaggacaaggcatggccagtagcactggaagttcccccagtatgggtgga
ccaggaatgaatggaccaatgtctggtaacaacaccgctatgggcaaccacggcatggct
gggggaagttctggtggacctatgggccattctatgccaatggaggaaatgagagcaatg
agccatggtaacggaagttcatcattagctccacctaattctaggatggaccaggaccaa
aaccaacagggtcagcaaaacatgccaccaaaccaaagtggaggaccatcacgatacaac
ttctccaccccacaacttacacaactccgcggacagatcatggcctacaaactactggcc
agaaaccaaagcattccagataatgtacgcatggctattgaagggaagcgtcaatttggg
agtggatcaagaccaatgaacgagtctaaccaacagcgaatgccacagcagcctccccag
cctcacatgccgtcacagggtatgcactattctggtggacagagtatgcctccgggacca
cccagtcagactgcccaggctggatcacagcctcgaccacagtcccagcaggctcctcag
tcagctgtccagtccgtgatctctatgcagcagaagcagagccggatcgcaccagtcgcc
aaacctcagggactggaccctttggagattctaaacgaaagagaaaatagaattgcatcc
agaatatcatcgaggatcaaagaacttgaatatctaccaggtgtaatggaggaagatatg
aaagtaaaagctatgattgagttcagagcgctgagattactcaacttccaaagacagttg
aggtcggaggttgtagcctatatgaggaaagatacaacactagagacagcactgaacact
aaggcttacaagaggagtaagaggcagtcacttagggaggcgcgtgtaacagaaaagctt
gagaaacaacaaaaactcgaacacgaaaaacgacgcagacaaaaacatcaggaatatctg
aatgctgttttacaacatgcaaaggactttaaggagttccatcgtaatgtatcggccaag
atcagcaaactgaacaaagctgtaatggtccatcatgctaacacagaaagggaacaaaag
aaggaacaggaacgactggagaaggaacgtatgaggagactcatggctgaagatgaagaa
ggttacagaaaactgattgatcagaagaaagacaagcgtctggcttatctccttcaccag
actgacgagtatatcacaaacctcatgtctctggtatcggcacacaaagaggatatcaaa
aagaaaaaacaggctaggaaaaacaaaaagaaaaaggaacctggggatcatcctgataat
cctgatgaaagttcaaacatgagtgaaccaagaatatctgtgatagaaaccaataccgga
aaagttcttagcggggaggatgctccaatgtccactcagctggaggcttggttagaaatg
catcctgggtatgaagtggcccccagagaagatggagaagaagatgatgaggaggaagag
gaggaggaggaagagcatgaagagatcttaccaccgccaccacccccagctgtcaatagg
cccaatatacagtcagtggacgacctggctgagcacgaggctacagaaattattcaaacg
gcagcgtctcgtctggatgacgatgaataccataaccaggtggagatgaggaactactac
aacgtagctcacacggttcacgagaccgtgacagaacaggctagcatcatgatcaatgga
aaactcaaacattaccagatcaaaggcctggaatggatggtgtctttatataacaacaac
ttgaatggtatcctcgcagatgagatgggtttggggaagactattcagaccattggacta
atcacatacctgatggagaccaagaggattaatgggcctttcctcatcatcgtaccactc
tctacactatccaactggttgatggagatagagaaatgggcgccatcagtgatcactata
tcatacaaaggctctcctgtcacgcggcgcgccatagctccacagctaaagatgggcaag
ttcaatgtgctgctaacgacgtacgagtatatcatcaaagacaagtctgtgttagctaag
ttacgctggaagtacatgattattgatgaaggccatcgtatgaagaaccaccattgtaaa
cttacccaggttctaaacactcactactgtgctccccaccgtctcttgttaacaggaacc
ccactacagaacaaactgccagagttgtgggccctgcttaatttcttgttgccaagtatc
ttcaagtgctgtactacatttgaacagtggttcaatgcaccttttgcaatgactggagaa
aaggtggagttaaaccaagaagaaactcttttgattatcagacgtttacacaaagtgctg
cgtccgttcttgttacgtcgtctgaagaaagaggtggaatctcaactgcctgataaggtt
gaatatgtgatcaaatgtgagatgtcagctctccagcgtgtggtttacagacacatgcag
tccagaggtattctcttaactgatggatcagaaaaggacaaaaagggtcgaggaggtgct
aagacgatgatgaacaccatcatgcagttgaggaagatctgtaaccatccatttatgttc
caacatctagaggaggcattcgcagagcatcaaggattgtcaactaatgttgtgcaaggg
cctgagctatacagagcggcagggaaatttgaactgctggacaggatgttccctaaacta
aaggcgacgggtcacagagttcttctcttctgtcagatgacctcactaatgagtatcatg
gaggattactttgtttacagagggtaccgatacctccgtctggatggtactactaaggct
gatgaccgtggccagctcctcaatgtgttcaactgtgctgattcaccttactttgtgttc
ttactgagtacgagagcaggaggactgggtctgaacctccaggccgccgacaccgtcatc
atctacgattctgactggaatccacatcaggacttgcaagctcaagacagagctcacaga
attgggcaacagaacgaggtgcgtgtgctacgtctaatgacggtaaacagtgttgaggag
agaattctggctgcagcccgctacaaactgaacgtggacgagaaagtcatccaagctgga
atgtttgacaacaagtcaacgggaacagagagacgtcagttcctgaccacactgttgtta
caagagaatgacgaggctgaagaagaagatgaagtaccagatgatgagactatcaatcag
atgttggcgagaacggaggaagagtttgacctgtaccagaaaatggatatagagcgaaga
cgagaagaggcgagaaatcctaacagaaaaccacgacttatggaacaggacgaactgcct
ggctggattgtcaaggacgaagctgaggttgaaagactgacgtttgaagatgaggaagac
aaaatgtttggacggggatcaagacagaggaaggaagtggattactcagactctctcaca
gagaaacaatggctaaaggctatagaagatggtaacttggaggaggtagaggagcaggta
aaaagagttcctacgtcagaaaagaagaaaacaaagaaacgaaagatagccgtggtggat
gatgatgatgataagaagccaaagaagaagagaggacgtccgccagtagaaaaactacct
cctaacccacccaaactcacgaaaatgatgaagaaacttctggacgtcatcatacattac
aaagacaatgatggacgagtcttgagtgatgccttctttcagctgccatctaaaaaagaa
ctaccagaatactacgagattataattaaacctgttgacttcaaaaagataaaggctcgt
atcagggaccacaagtatagaagtatagatgaccttgagtctgatgtcctgaccttgtgt
gagaatgcacagtcctacaacatagagggatctttgatctatgaggattccattgtccta
caatctgtgttcactaacgcgagagaaagactggagaaggatgggtttaatgtatcgtct
gatgagagtgccagtagtgagggagaggaggaagatgaaaatggtgatgaggatgatgaa
gaggttataaaagtcaaaggaaaatcaaaagaatcatctaagaagtctggtagtgctaga
aaacaacgcaaatctagagggaagtcacgagtggtgatcagtgacgacgaggaagatgga
gaggaagaggaccaatcggaggaagagacagccccaagttcacgcagctcttcaagagtt
tcctcccctgctccgggacgtcgacaacgctag
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integrated database retrieval system
