Argopecten irradians (bay scallop): 138327001
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Entry
138327001 CDS
T10542
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03410
Base excision repair
airr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
138327001
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138327001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
airr03036
]
138327001
03400 DNA repair and recombination proteins [BR:
airr03400
]
138327001
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
airr04147
]
138327001
Chromosome and associated proteins [BR:
airr03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
138327001
DNA repair and recombination proteins [BR:
airr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
138327001
MMR (mismatch excision repair)
Other MMR factors
138327001
Exosome [BR:
airr04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
138327001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Use1
YABBY
Ccdc124
Motif
Other DBs
NCBI-GeneID:
138327001
NCBI-ProteinID:
XP_069129064
LinkDB
All DBs
Position
7:1737625..1743834
Genome browser
AA seq
222 aa
AA seq
DB search
MVGKAEAGKPKGRMSSYAFFVQTIREEHKKAHPGEKVVFAEFTKKCAEKWKTMSAQEKMR
FEDMAQKDKARYDLQMRTYVPPKGEKKSRKRTKDPNAPKRSLSAFFFFCADERGKVKAKN
PNWTVAEVAKDLGRQWEKCPNRPFYEQKAIADKKRYEIQSEQYKQGKTFTDVNLEQLMPA
KKAKTVVPQAVAQEEEDDDDEEDDDEEEEEDDDEEEEDEDDE
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaaaagctgaagcagggaagcccaaggggcgaatgtcgtcgtacgctttcttt
gtacagacaatccgagaggaacacaagaaagctcatcctggggaaaaagtggtgtttgca
gaattcacaaagaaatgtgcagagaaatggaagacgatgtcggcccaagagaagatgagg
ttcgaggacatggctcagaaagataaggccagatacgatctacagatgagaacctatgtg
cctcccaagggagagaagaaaagtaggaagagaaccaaagacccaaatgctcctaaacgg
tcactgtctgccttctttttcttctgtgctgacgagagaggaaaagtaaaggctaagaac
ccaaactggacagtggctgaggtggccaaagatttgggcagacagtgggagaagtgtcca
aacagacccttttatgagcagaaagctatcgcagacaagaaaagatatgaaattcaatct
gaacagtacaaacaaggcaagactttcacagatgtgaacttagagcaactaatgccagca
aagaaagccaaaacagtggttcctcaggctgtagcgcaggaagaggaagatgatgacgat
gaagaggatgatgatgaggaggaggaagaggatgatgatgaggaggaagaggatgaggat
gatgaatag
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