Argopecten irradians (bay scallop): 138328127
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Entry
138328127 CDS
T10542
Name
(RefSeq) protocadherin gamma-A10-like
KO
K16498
protocadherin delta 1
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03273
Virion - Lassa virus and SFTS virus
airr04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
138328127
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
138328127
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
airr01009
]
138328127
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
airr04515
]
138328127
Protein phosphatases and associated proteins [BR:
airr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138328127
Cell adhesion molecules [BR:
airr04515
]
Cadherins
Protocadherins
138328127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_Cad99C_N
Cadherin_2
Ig_CLSTN
Cadherin_CELSR2_9th
TMEM154
TMIE
SCIMP
E_spl_m6
Motif
Other DBs
NCBI-GeneID:
138328127
NCBI-ProteinID:
XP_069130868
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All DBs
Position
7:31049792..31113870
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AA seq
1133 aa
AA seq
DB search
MSFKFPLVLFCVFLTISSIFGQDLSYPIPEEEYPNYYIGNIREDFNLSSYFLPTELDDYE
TLKYSILSQTTVPASYFNINERTSSLFTSQKLDRESLDHCEFSLVCELAIDVIAKGSKST
FFKKIKVKVFLLDINDNTPTFTVNKTSLEVSEAFVVGSSIPIDGAVDRDSSINSIQSYNI
SERNVPFSVKFDKYVDGSSSVKIIIDSKLDSETRNFYRLHVLAIDGAVQQRTGTMTVDIR
VTDVNDNAPEFTKSVYNITIAEDTPVGNVILKVKATDADSGANGQVLYRLSPHQLSVIHT
FFAIDNITGDLSLVHPLVYERGEVYEIFIEATDNATKPLFTQATVYVSILDSSNDPPEIN
INLLSNADVAKISEDANTGAAVAHIGVTDDDRGVNGDVTCRVQSYYFTLDPIGPNEYKVV
VHKKLNRELIEKHKVKVICEDGGSPPLNSTAEFEVKVLDENDHAPKFTQQLYLPEITENN
QYGATLLQVSANDFDAGINSEIVYSLVPTNNDKFSIDPDTGEVFVNAHLDRENSSRVEFG
VIATDKGTPPQTGTTSVRVTILDENDNRPKFSETVYTFSVRENLSDSVHVGNVKASDPDE
GQNGVVEFTMLPALDTSGNFPFIVYSNGSIYTTQVLNRELQPHGYNFRVIAYDLGSPSQN
STSHVTVFVGDINDNGPIIVFPTFDNKTVKIVYNTGTDHVITKVIAYDPDLGGNSKLSYT
ILQDDLTNPFYIDQNTGEIYLAKPLGISDIQTYTFTVLVEDNGVPRRSSMQNLTIIVTTL
GDGGVDTPSHPDNLVIAIVITCVTIVLSMAIILVICIIKRIDRQRKAMNKSANSSDSDDK
RRDMYDAIARNLDNESNSQAEKKVSFSVDSDPNLIISASDSSSKFPNTTLGVEEILDRIM
PPPKPERVTPREDNSEQQYQQQNLSTVARLQRHQEYLQACDKPSWGSNSNLEGEMYKKQD
DNHSETSGETSTSDSGRGGSESDIQSSGGLSHCLELDYLKNMYSPSNSPRKENMPTHSEG
AEPRRVPSGSDNSDPRRVQNLNQLHFKHPHLLPSKSRTVHLNSHNNVYPSRGGVPHKGRG
QVVHWRGMTDYLNTSMATIEDYDEDDNTTTSGSYVVEDQDLQTDMAVGMDCFV
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatttcccttggtgctgttttgtgtatttctgacgatttcatcaattttc
ggacaggatttaagttatccgattccagaagaggagtacccaaattattatattggaaat
attcgtgaggattttaatttatcatcatatttcttacctactgaattagacgactacgaa
acgttgaaatatagcattctttcgcaaacaacagtgccagcatcatatttcaatatcaat
gaacggaccagctctctgtttactagtcagaaacttgacagggaatcactcgaccattgt
gaattttctttagtttgtgaactagctattgatgtcatcgctaaaggaagtaaaagtaca
ttctttaagaaaattaaagtgaaagttttcttattagatatcaacgataatactccaaca
ttcactgtgaacaagacaagcttggaagtatccgaggcttttgttgtcggttcatctata
cctatagatggcgctgtagacagagatagttctataaattccattcaaagttacaatatt
tcggaaagaaatgtgccattttctgtgaaattcgataaatatgtggatggaagttcttca
gtgaaaattatcattgattcaaagttggatagcgaaaccagaaatttttaccgattacat
gtgttggcaatagatggtgctgttcaacagagaacgggtaccatgacagtggatattagg
gttactgatgtaaatgataatgctccagaatttactaaatcagtttacaatatcactatt
gctgaggatacaccagtcggcaatgttatcctcaaggtcaaggccacagatgctgactct
ggtgctaacggccaagtcctctaccgactcagtccccatcaactctccgttatccataca
tttttcgcgatcgacaacatcacaggagatctaagtttggttcacccacttgtgtacgag
cgcggtgaagtttacgagatatttattgaagccacggataatgccacaaagccacttttc
actcaggccactgtatacgtcagcatcctggattccagcaacgatccgccagagatcaac
atcaacttgttgtcaaacgcagacgtagccaaaatctcggaagatgccaacactggtgcc
gcggtcgctcatattggtgtaaccgacgacgacaggggagttaatggtgacgtgacttgt
cgtgttcaaagctattacttcaccttggatcctatagggccaaatgagtacaaggtcgtt
gttcataaaaaactgaacagggagctcatagaaaaacataaggtcaaggtcatttgtgaa
gatggtggtagtccacctcttaattctacggcagagtttgaggtgaaagttttggatgaa
aatgaccatgctcccaaatttacgcagcagttgtatctgcctgaaataactgagaataat
cagtatggagccactttactccaggtatccgcaaatgattttgatgcaggcatcaattca
gaaattgtgtattctctcgttccaacaaataatgacaaattctcgattgacccagataca
ggtgaagtgtttgtaaacgctcaccttgaccgtgaaaattcctctcgtgtagaatttggt
gtcattgcaaccgacaaggggacccctccacaaactggcaccacctctgtaagggttact
attctggatgaaaatgataataggcccaaattttcggagacagtgtacacattctcagtg
agggagaatttaagtgacagtgttcatgttggcaacgtgaaggcttccgaccctgatgaa
ggtcaaaatggagttgttgagttcacaatgctgccagcgttagatacatcaggaaatttt
ccatttatagtgtacagcaatggatctatatacacaacacaggttttaaaccgagaatta
caaccccatggatacaattttcgtgtaatcgcctacgaccttggatctccgtctcaaaat
agcacctcccatgtgactgtgtttgttggagacataaacgacaacggtcctatcattgtc
ttcccgacattcgataataagaccgttaaaatcgtttacaatacaggaactgaccatgtg
atcacaaaggtcatagcttacgaccctgaccttggcggtaattctaagctatcctataca
attttacaagatgacttgacaaaccctttttatattgaccaaaatactggtgaaatctac
ttagccaagcccctagggatctccgatatccaaacctatacttttaccgttcttgtggaa
gacaatggggtgccaaggagatcgtctatgcaaaatctcaccatcattgtcacgaccctt
ggtgatggtggagttgacacgccttcccaccccgacaaccttgtcatcgccatcgtaatc
acatgtgtaactattgtattatcaatggcgattatcctcgtaatatgtatcattaaacgg
atagacagacagaggaaagcgatgaacaaaagtgctaatagttcagattcggacgacaaa
cggagggacatgtatgatgcaattgctcgtaaccttgacaacgaaagtaacagccaggct
gagaaaaaagtgagtttttcggtggattcagacccaaatctcatcatatcggcttccgac
tccagttccaagtttcccaacacaactttaggcgttgaggagattctcgacagaattatg
ccaccacccaaacctgaaagagtcacaccaagagaagacaactcagagcaacaataccag
caacagaacctgtccacggtagccaggcttcagcgacaccaagaatatcttcaggcgtgc
gataaaccctcatggggaagtaactccaatttagagggagaaatgtacaagaaacaagat
gacaaccacagtgaaacctcgggagaaacctcgacgagtgatagcggccgtggaggcagt
gagagtgatatacagagcagtgggggattatcacactgtctggagttagattatttaaaa
aatatgtattcaccatccaattccccacggaaggagaacatgcccacacatagtgagggt
gcagaaccacggagggtaccctctggtagtgacaacagtgacccacggagggtacagaac
cttaatcagttacattttaaacatccccatttattaccctccaaatcacggacagtgcat
cttaatagtcataacaatgtgtatccctctcgtggtggggttccacacaagggtcgaggc
caagtcgtacattggcgtggtatgacagactatttaaacacgtcaatggcgacaatagag
gattacgacgaagacgacaatacgacgacgtcggggagttacgttgtagaggatcaagac
cttcagacagacatggctgtcggcatggactgttttgtgtga
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