Argopecten irradians (bay scallop): 138328190
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Entry
138328190 CDS
T10542
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50.L-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03440
Homologous recombination
airr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138328190
03450 Non-homologous end-joining
138328190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
airr03032
]
138328190
03400 DNA repair and recombination proteins [BR:
airr03400
]
138328190
DNA replication proteins [BR:
airr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
138328190
DNA repair and recombination proteins [BR:
airr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
138328190
BRCA1-C complex
138328190
NHEJ (non-homologous end-joining)
MRX complex
138328190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
SMC_N
AAA_13
ABC_tran
AAA_29
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
138328190
NCBI-ProteinID:
XP_069130976
LinkDB
All DBs
Position
7:32872123..32909779
Genome browser
AA seq
1311 aa
AA seq
DB search
MSTIEKMTIQGIRSFGPDDSEKQMIEFYNPLTLILGPNGTGKTTVIECLKYMTTGVMPPG
SKGGAFVHDPKVAHEREVKGQIRLQVKDVSRQTVIVQRSLQVTQKAKNITMRTLEGVITR
RDAAGEKKSISSKCAEMDREMITSLGVSKPVLENVIFCHQEESNWPLSEGKALKEKFDAI
FASTRYVKALDTIMKLKKNQDIELKMQRSDIVFFKQHKDKAAQLDADMNELEVKLEASKE
SVVKVAEKLVPIEDKLEQISVKTGEIYKIQTDVTKNQSELKQMEKAAEELQENIENEFQG
STEELKKVLSDFQSKVQEREEKLEEYERRKEDLTREVDRVVKNKNDTLVEVSKLEQEAQN
HEENTRKRDALIRQMADKYDFDGFSRGEITEEKYRQFVENIREKLVTMVDEGKQLKADFE
KQEEELQQKMDDLRENKTKLEQNERIKKDMMADNMDKMKQINRKLSQVEASAGKLDQLTR
ELKRADHDLQTAEESLDVDKTKQEISQLTKDKTKLDTQIAELSSEMNRLHLQSSAQAQLD
VLKKDKISKEETIRRLRAKHEDTLSYLMGHMPTSNIRGQLESYIANQNESVKKLSQDLQR
SQTSLSSKEAEKKMMSEQLRKKEDDLKNMEEKIFSVCGSQNFEDGIAVLQAKKAQCQDSK
GSLLGAEHFYKKYVEKLEQEEPCCPLCRXEFDTEQETKELVLELKEKLRQVPTKLRKAEK
DLLEYEKKYDAMMQLKPLRENMSVLEEKEIPEMKSKVRKVNEEIEKLRTAISDFTDDHET
KEQDHDMAKQIQPDVVLMDRYHGEVTELEKRIATQAATLSGGDSGRTLQNVIDEKEDIQM
KVDTITRKLDHKRQKLNDHSEEVQRLKSNINSLREEKLQIDNDLQQRYKLESDKATLLSE
NEIYEKEIKEAATQIKPLQNQIDKAAKEKQNIVEAKEDQMEQTKAMIDKVKSDATKVKTV
NQDMKVYIQSGKEDMLEQKREELVQIGKRMEKLAYQQEKVITGIDKLNKDLATQQVRERE
LLDNLSLRKKHREIEKVKKVLGELLEQLGGVDAHNLERDRKRLINQQEDLIKEKHLVVGR
QRGFEDQIRALKKELQGEMYKDATQKYRDKMILLRTTELANSDLEKYYKALDKAIMSYHN
LKMDEINKIIRELWTNTYRGNDIDTIEIRSDEDEGGMKTRRTYNYRVVMLKGEAALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGVLALDEPTTNLDRENIESLAFALVEIIKSRKEQ
RNFQLVVITHDEDFVELLGRSDYVDWFFKVRKDSNGYSQLVKAKVQDLHAR
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaatagaaaaaatgacaatccagggaatccggagtttcggtcctgatgactct
gagaaacagatgatagagttttacaaccctctaactctaattctgggaccaaatgggaca
ggcaaaactactgtgattgaatgcctgaagtatatgacaactggagttatgccccctgga
tcaaagggcggggcgtttgttcatgaccctaaggttgctcatgaacgggaggttaaaggt
caaattaggttacaggtcaaggatgtttccagacaaacagtcattgtacagaggagctta
caggtcacacagaaggcaaagaatatcacgatgcggacgttggagggagtcataacaaga
cgagatgcagcaggagaaaagaaaagtatcagttccaagtgtgcagaaatggaccgggag
atgataacatccctgggagtgtcaaagccagtattggagaacgtgatcttttgtcaccag
gaggaatctaactggccgctcagtgagggcaaggcgctgaaggagaaatttgatgccatc
ttcgcttccaccagatatgtgaaagctttggatacaatcatgaagctcaaaaagaaccag
gacattgagctgaaaatgcagcggtcagacattgtcttcttcaaacaacataaagacaag
gcggcccagctggatgcagacatgaatgaattggaggtaaaactggaggcgtccaaggaa
tctgttgtcaaagtagctgagaaactggtcccaattgaggacaaattagaacagatcagt
gtaaagacaggagaaatctacaaaatccaaactgatgtcacaaagaaccagagtgaactc
aaacagatggagaaagcggcagaggaactacaggagaatattgagaatgagttccaaggc
tccacagaagaattgaaaaaagtcctgtcagattttcagagcaaggtccaggaaagggaa
gaaaaacttgaagagtatgaacgtcgcaaagaagaccttacaagagaggtcgatcgtgtt
gtcaaaaacaagaatgacaccttggttgaagtgagcaagctggaacaggaggcccagaac
catgaggaaaatacccggaaacgtgatgcattgatccgacagatggctgacaagtatgat
tttgacggattttcacgaggagaaataaccgaagagaagtatcggcagttcgtagaaaac
atcagagagaaacttgtaacaatggtggatgaagggaagcaactcaaggcagactttgag
aaacaagaagaagagctacaacaaaagatggatgatttaagagaaaacaagaccaagctg
gaacaaaatgaacgaatcaaaaaagatatgatggctgacaatatggacaagatgaaacag
atcaacaggaaattgagtcaagtggaggcgtcggcgggcaaactggatcaattgacgagg
gagcttaaacgggcagatcatgatctgcagacagctgaagaaagccttgatgttgataag
acaaaacaggagatttcacagctcacgaaagataagaccaaactggacacacagatcgca
gaactaagttcagagatgaacagacttcacctccagtcaagcgcccaagcacaactagat
gttctgaagaaggacaaaatatcaaaagaggagacaattcgccgtctacgagctaaacat
gaagacacactatcatatctaatgggccatatgccgacaagtaacatccgaggtcagctg
gaaagctacatagcaaaccagaatgaatctgttaaaaagctgtcacaagacttacagaga
tcccagacatcactgtcatcaaaggaagccgagaaaaagatgatgagtgaacaacttcga
aagaaagaagatgacttgaaaaatatggaggagaagattttctctgtgtgtggaagtcag
aactttgaggatggcatagcagtgttacaggccaaaaaggctcaatgtcaagattccaag
gggtctctgctgggtgccgagcatttctacaagaagtatgtcgaaaaactagaacaagaa
gaaccgtgctgccctctatgtcgancggagtttgacacagaacaggaaaccaaggaactt
gtcctggagttgaaggagaaactgcgccaggtgcccaccaaattaagaaaagctgaaaaa
gacctgttggaatatgagaagaaatatgacgccatgatgcaactcaaaccccttagggaa
aatatgagcgttttggaggaaaaagaaattccagaaatgaagagtaaagtgaggaaggtg
aacgaagaaatagaaaagctgagaacagccatatcagatttcactgatgaccacgaaacg
aaggaacaggaccatgacatggccaaacaaatccagccagacgtcgtcctcatggaccgt
taccatggcgaggtgacagagctggagaaaaggatagccactcaggctgcaactttatca
gggggagattcgggaagaactcttcaaaatgtcatcgatgaaaaggaggatatacagatg
aaagtagataccataaccagaaaattagaccacaagaggcaaaaattgaacgaccattcc
gaggaagtccaacgtttgaaaagcaacatcaactcccttagggaagaaaagcttcagatt
gacaatgatctccagcagagatacaaactcgaatcagacaaagctacactcctcagcgag
aatgaaatatatgaaaaggaaatcaaggaggccgctacacagatcaaaccactacagaat
cagatagataaagcagccaaggagaaacagaatatagtagaggctaaggaagaccaaatg
gaacaaacaaaagccatgattgacaaggtcaaaagtgacgccaccaaggtgaagactgtg
aaccaagacatgaaggtatatattcagtctgggaaagaagacatgctggaacaaaagaga
gaggaacttgtacagataggaaaaaggatggaaaaattggcataccaacaggagaaagtg
attactggtatcgacaaactcaacaaagatctggcaactcaacaggtgcgtgagcgtgag
ttactggataatttatcactgaggaagaaacaccgagagattgagaaggtgaaaaaggtc
cttggtgagcttctggagcagttaggtggtgtggacgctcacaatctggagcgggacagg
aaacgtctcatcaaccaacaggaggacctcatcaaggagaaacatttagttgtgggtcga
cagcgtggatttgaggatcagatccgagccttgaagaaggaactacagggcgaaatgtac
aaggatgccacacagaagtaccgtgacaaaatgattctcctcaggacgaccgaactagct
aacagtgacttggagaaatattacaaggcacttgacaaggctatcatgagttaccacaat
ctgaagatggatgaaataaacaagattattcgtgagctgtggacaaacacgtaccgtggc
aatgatattgacacgatcgaaatcaggtcagatgaggatgagggtgggatgaagacgagg
cggacatacaactacagagttgtcatgttgaagggagaggcagcactggacatgagaggg
cgctgtagtgctggtcagaaggtgctggcctctctaatcatccgtctggccctggccgag
acattctgcctaaactgtggagtgctggcactggatgagccaaccacaaacctggacaga
gaaaacatcgagagtttggctttcgcacttgttgagattattaagagcaggaaggagcag
agaaacttccagctggtagttattacccacgacgaagactttgtagaactcctgggacgg
tctgactacgttgactggttcttcaaggtccgcaaagattcaaatggatattcacaactg
gtcaaggctaaagttcaagacctacatgctcgctga
DBGET
integrated database retrieval system
