Argopecten irradians (bay scallop): 138328424
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Entry
138328424 CDS
T10542
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03013
Nucleocytoplasmic transport
airr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138328424
09122 Translation
03013 Nucleocytoplasmic transport
138328424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138328424
03041 Spliceosome [BR:
airr03041
]
138328424
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
138328424
Spliceosome [BR:
airr03041
]
Complex C
Other components
EJC/TREX
138328424
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138328424
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_19
Motif
Other DBs
NCBI-GeneID:
138328424
NCBI-ProteinID:
XP_069131329
LinkDB
All DBs
Position
7
Genome browser
AA seq
1592 aa
AA seq
DB search
MAVAQHCKTWEKSGRTEFLKLCKNSAENNGLWNQGPKSLSRSLYDLCWQVIKGQLKQEQA
LSALSEASDAHTGIPSVLADVFGIVDIESSVTEDKVQRERFISLVSSCDIFVPSAVLKER
LDQELLESCGLITSKLQFQQKYVKTKTKLYYKQQKFNLLREESEGYAKLVTELNQEFTDK
TTYTQVLENLKSLIGCFDLDPNRVLDILLESFERRPELHDFYVPLFKEYVTEQKTLCHIL
GFKFHFFKEEETPASLYTLAAQLLQNGLIDLDTLYPHLSPPDAKIREQHQKDIDEAKAYT
KKLSVVVLSDRAEDKKDDETVKVDVHLTNQKLGLIEALLGLGAWDNAKQILDRLPEFFAT
IYKPIARALCSLVHFMMDPVYKRNSGLPSKILKSKLQDGGKFGSKVAQAHTFRQLHQMVL
PVMRYLGPYTSCDPILMVKIIRLGKNFMAKRQSGGISPDDEVAYYGFLNMLDEVLLPGMV
LLPCNCCISEELWGFIRLFPYMLRYRLYGNWKNDTYSHHSKLIRARADCMERAKYIMKRL
AKENVKPSGRQLGKLSHSNPGVVFEYVLSQIQRYDNFIGPVVDSLKYLTSLSYDVLAFCI
IEAVANPEKDRMKYDDTNISLWLQSLANFTGSICRKYNIELAGVMQYVANQLKAGKSFDL
LLLREVVQKMAGIEISEEITGDQLDAMSGGELLRQEGGYFSQVRNTKKSSTRLKDTLLEH
DLALSLCLLIAQHRDGVIFHEGADTHLKLIGKLYDQCQDTLVQFGSFLSMQLSSEEFVKR
LPDVDTLITTYHIPPDAAFFLCRPAFTYAINSKFDELRKIDKSNKHNSSQQKMQRYIEAS
EFVNGPVIELVRPLYTAKVWEDLSAPFFVTFWSLQMYDLAVPSNVYDKQNQQLSTQINSI
EDNKDMPQSKKKKEKERCNTLMDKLKDEEKKQGEHVARVLNRLKNQKEQWFISRSSKNET
ITQFLQLCIFPRCCFTAIDALYCAKFIHILHDLKTPNFSTLICYDRIFCDITYTVTCCTE
NEAHRYGRFLCTALDTIMRWHSNRSIYEKECASYPGFVTVFRKGTDSNNKADQLDYENYR
HVCHKWQFRITKAMVSCLESGKFIQIRNALIVLTKILQHYPRITQFGQALERRVDRLRQE
EKDKRQDIYALAMGYSGQLKSKKTTWVQEAEFHLKDKEVKSTTKTSSASAQQSSAPTTNG
VADNGPKKMNGEVKSQSKRTENGEASSSKSKEPKETKEVKEKKSREPAEKKDKSETKSKS
EKHSVEERREITSSSKKEEKPSKDKDKSHTEDRSKERAHSSKEVKYSKEEDTEWVAKEDR
GHSSKEVVRVKEEKVRVKEEPRERKVEMKAEKPSKREEKHEKVKLKRTYDTEGRDGSREV
RDGSRDTMRDYRESPKDGYRERRVEEHPERASSVGSSGSHGSANFRRSPDKSPQYADERD
GKRRRLDTSATPSSSKESVRSESRERHKRSPSYEREKDRDRERRDRKRGKGIVYQVKESL
EDRLEVETKKRKSVEPSSSKSSSKVNGDTERHASKATEKSHKHDKLMASAMLQDEESSPQ
RTKKEKEKTKKSDRSDKEKTKDKSSSSKKSKK
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctcaacactgcaaaacatgggaaaaatcggggagaacagagtttttgaag
ctatgtaaaaattcagcagagaacaatggtttgtggaaccagggtccaaaatcactgtct
cgaagtctgtatgatttgtgttggcaagtaatcaagggccaattaaaacaggaacaagct
ctttctgcgctcagtgaagcatcagatgcacacacaggaatccccagtgttttggcagat
gtgtttggcattgttgatattgagtcatcagtgacagaggacaaagtccagagagaaaga
tttatctctttggtatcatcttgtgatatatttgtgccatctgctgtactgaaagaaagg
cttgaccaggaattactagagagctgtggactcatcacatctaaactccaatttcagcag
aaatatgtcaagaccaagacaaaattatactacaaacaacaaaagttcaacttgttgcga
gaagaaagtgaaggttacgcaaagctagttacagagcttaaccaagagttcacagacaaa
accacgtatacacaggtgttggagaatctgaaatctcttattggttgctttgatttggat
cctaatcgtgtcttggacattcttttggaatcatttgagcgccgtccagaacttcatgat
ttctatgtacccctctttaaagaatatgtcacagaacagaagacgctgtgtcatatactt
ggctttaaatttcatttcttcaaggaggaggaaacgcctgccagtctgtacacacttgct
gcccagctactacagaatggtctcattgatctggacactttatatcctcatctgtctcct
cccgatgccaaaattcgggaacaacatcaaaaagatatagatgaagcgaaggcttacact
aagaaattgagtgttgtggttttgtcggatcgagccgaggacaaaaaggatgatgaaact
gtcaaagtggatgtgcacttaacaaaccagaaactggggctgattgaggctttacttggt
cttggagcttgggacaatgctaaacagatactagaccgtcttcctgagttcttcgctacc
atctataaacccatcgccagggctctctgttctctggtgcattttatgatggacccagtt
tacaagagaaactctggtttgccaagtaagattctaaagagcaagctacaggatggaggt
aaatttgggagcaaggtggcccaggcccatacattccgacagctgcatcagatggttctc
cctgtgatgagatacctcggaccttacacctcctgtgatcccatccttatggtcaaaatc
atacgactcggcaaaaacttcatggcaaagagacaaagtggtggaatcagcccagatgat
gaggtggcgtactatggtttcctcaacatgttagacgaggtgttgttaccagggatggtc
cttctcccctgtaactgctgtatctcagaagaactgtggggcttcatcagactcttccct
tacatgttgagatatcgtttatatggaaactggaagaacgatacctacagtcaccattcc
aagctaattcgagcacgagctgattgtatggagagagccaaatacatcatgaaacgtcta
gcaaaggaaaatgtgaagccctcaggacgtcagcttggaaaacttagtcacagcaaccca
ggggttgtgtttgaatatgtgctgtctcagatacagagatatgacaacttcatcggacct
gtcgtggactctctcaaatatctcacctcgctatcctatgatgtactagccttttgtatt
attgaagctgtggctaaccctgagaaggacagaatgaaatatgatgatacaaacatatcc
ctgtggctacaaagtttggctaacttcaccgggtcaatctgtcgaaagtacaatattgag
ttggctggagttatgcagtatgtcgccaatcagctcaaggctggcaaaagctttgaccta
ttgctcttgcgtgaggttgtccaaaagatggctgggattgaaatctcggaggaaatcact
ggagatcagcttgatgccatgtcaggtggagaactacttcggcaagagggtggttacttt
tcacaagtgagaaataccaagaagtcctccactcgactgaaggacacactactggaacac
gacctggcgctgtcactgtgtttgttgattgctcaacatagggacggagttatattccac
gaaggtgctgatactcatctcaaactcatcggcaagctgtatgatcagtgccaggacact
ttggttcagtttgggagttttctgtctatgcagctaagctccgaggagtttgtaaaacgc
ttgcctgatgtggatactctcattacaacataccatattcctccggatgcagccttcttt
ctttgtaggccagcatttacatatgcaattaattcaaaatttgatgaactcaggaaaatt
gacaagagcaataaacacaactctagtcaacaaaaaatgcagagatatatagaggcgtct
gagtttgtcaatggtcctgtgatagagctggtgcggccactgtacactgctaaagtgtgg
gaggatctcagtgcacctttctttgtgacattttggtcactacagatgtacgacctggca
gtaccgtctaacgtgtacgacaaacagaatcagcagctcagtacacagatcaactccatt
gaggataataaagacatgcctcagagtaagaagaagaaagagaaggagagatgcaacaca
ctgatggacaaactgaaggacgaggagaagaaacagggcgagcatgtagcacgtgtcctt
aacagactcaagaatcaaaaggaacagtggttcatctcaagatcgtccaagaatgagacg
attacacagttcctacagctgtgtatattcccgaggtgttgcttcacagccatagatgcc
ttatactgtgccaagtttatacacatacttcatgacttaaagacacccaacttttcaact
cttatctgttatgacaggatcttctgtgatattacgtacactgtgacgtgctgtacggag
aatgaggctcatcgctatggtcgcttcctatgtactgccctcgacaccattatgagatgg
catagcaacaggagtatctatgagaaggagtgtgccagttaccctggatttgtgaccgtg
ttccgtaaaggtacagacagcaacaataaggccgatcagctcgactacgagaactaccga
catgtgtgtcacaagtggcagttcaggattacaaaggcaatggtgtcgtgtctcgagtcc
ggaaagttcattcagattcgcaatgctctcattgttcttacaaagatcctgcagcactac
ccacgcatcacccagtttggccaggccctggagcgtcgtgttgacaggctgagacaggag
gaaaaggacaaacgacaagatatttatgccctggccatggggtattccggtcaacttaaa
agcaaaaagactacatgggttcaggaagcagaatttcacttgaaagataaagaggtgaaa
agtacaacaaagacctccagtgcttccgcccagcagtccagtgcaccgactacaaatggt
gtcgcagacaacggaccaaaaaagatgaatggggaggtgaaatctcagtcaaagaggacg
gaaaatggagaagcttcaagttcaaagtcaaaagaaccgaaggagaccaaggaggtgaaa
gagaagaagtcgcgggaaccagcagagaaaaaagacaaatcagaaactaaatccaagtct
gagaagcattctgttgaagagaggagagagataacgtcaagctctaagaaagaggagaaa
ccttcaaaggacaaagacaagtctcatacagaagacaggtccaaggagagggcacacagc
agcaaggaagtcaagtacagcaaggaagaagacacggaatgggtagctaaagaggatcga
ggccattcctcaaaggaggtagtcagggtcaaagaggaaaaggtgcgagttaaggaggag
cctagggaaaggaaagtcgaaatgaaagctgagaaaccaagcaaacgtgaagagaagcat
gagaaagtgaaattgaagagaacatacgacacagaaggtagggatggcagtcgagaggtg
agggatggcagtcgagacaccatgagagattaccgagagtcgcccaaagacggctatcga
gagagacgagtagaggagcatcctgagagggcatccagtgtgggctccagtggtagccat
ggatctgccaactttcgccgtagtcctgacaagtcacctcaatacgcagatgaaagagat
ggaaagcgtcggcgcctggacacctctgctacaccttcaagttccaaggaaagtgttcgg
agtgaatcacgagaaagacacaagcggagtccatcgtatgagagggaaaaagatcgagac
agggaaaggagggacaggaagaggggaaaagggatagtttatcaagtaaaggagagtctt
gaagatagattggaggtggagactaagaaaagaaaaagtgtagaaccgtcctcaagtaaa
tccagttccaaggtgaatggtgacacagagagacacgccagtaaggctacagagaaatct
cacaaacacgacaagctgatggcttcggctatgcttcaggacgaagaatcatcgccacag
agaacaaaaaaggagaaggaaaagacaaagaaaagtgaccgcagtgataaagaaaagacc
aaagataagtcgtcgagttcgaagaagagcaagaaatga
DBGET
integrated database retrieval system
