Argopecten irradians (bay scallop): 138329399
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Entry
138329399 CDS
T10542
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138329399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
airr03021
]
138329399
03019 Messenger RNA biogenesis [BR:
airr03019
]
138329399
Transcription machinery [BR:
airr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138329399
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138329399
U7-dependent histone pre-mRNA processing factors
138329399
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
138329399
NCBI-ProteinID:
XP_069132461
LinkDB
All DBs
Position
8
Genome browser
AA seq
693 aa
AA seq
DB search
MATKRKPENQESFRVPIEESDELIITPLGAGQEVGRSCHLLEFKGKKIMLDCGIHPGLNG
MASLPFLDLVDVEEIDLLLMSHFHLDHCGALPFFLEKTEFKGRCFMTHATKAIFRWLLSD
YVKVSNIATDDMLYTEKDIENSMDKIETINFHQEVEINGIKFWCYTAGHVLGAAMFMIEI
AGVKILYTGDFSRQEDRHLMAAEIPNVHPDVVIIESTYGTHIHEKREDREARFTGLVHDI
VSRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMSVYQTYINAM
NEKIRRQITISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFENWCTDKR
NGCIIAGYCVEGTLAKHILSEPDEIVTMAGQKLPMKCSVDYISFSAHTDYQQTSEFLRAL
KPPHVVLVHGEQNEMSRLKAALIREYEDDTEYQMLVHNPRNTVPVTLHFRGEKMAKVVGK
LASEKPSQDQKVTGILVKRNFNYHIMHPSDLSSYTDLAMATVTQRLSIAYTGTINLLRYY
LNQLSGDVEQYMANDKPALKIFKAVTVLVEPKMAVVEWVANPVTDMYADAVVTVVLRAET
DPMPHKYVPPALKVDRGHITECLIEMFTDMFGTESVGKFIKGDKMTITIDDNTAIINIDT
LDVKCEDETLQQVVQTSVSKLMLAISPIKQAAH
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaaagaaagccggagaatcaagaatctttcagggtccctattgaggaaagc
gatgaacttatcattacaccattgggtgcagggcaagaagtaggccgatcatgtcacctt
ctcgagttcaaagggaagaaaattatgctggactgtgggatacatcctgggttaaatgga
atggcatcactgccatttctggatttagtagatgtggaggaaatagatttgctgttgatg
agtcacttccatctggatcactgtggtgcattaccattcttcttggagaaaactgaattc
aaaggcagatgttttatgacacatgccaccaaagctatatttaggtggctcttgtcagat
tacgtaaaagtcagtaatattgctacagacgacatgttatatacagaaaaagacatagaa
aacagtatggataaaatagagaccatcaacttccatcaggaagtggaaatcaatggaatc
aaattttggtgctatacagcaggtcatgtgttgggggcggccatgtttatgattgaaatc
gctggtgtaaagatattgtacacaggagacttctctcgacaagaagatcggcatttaatg
gcagctgaaatcccaaatgtacatccagatgtcgtcattattgaatccacatatggcaca
cacattcatgaaaagagggaagacagagaggcgagatttactggactagtccatgatatt
gttagcaggggaggcaggtgcctgattcctgtctttgctttaggtcgagcccaagagttg
ctgctcattctggatgagtactggagtaaccatccagagttacacgacattcctatctat
tacgcttcttctcttgccaaaaagtgtatgagcgtttatcagacatacatcaacgccatg
aacgagaaaatccgccgacaaatcacaatcagcaatccgtttgttttcaaacacatatcc
aatctcaagagtatggagcactttgaagatattggcccgtctgtagtgctggcgagccct
ggtatgatgcagagtggactctcacgggaactgtttgagaactggtgtacagacaagcgt
aatggttgtatcatcgccggttactgtgtggaggggacattggccaagcacatcctgtct
gagcctgatgagattgtgacgatggcaggtcaaaaattaccaatgaaatgttcggtggac
tacatatccttctcagctcacaccgactatcagcagaccagcgagttcttacgggcactc
aaacccccacatgtggtacttgtacatggagaacagaatgagatgtcacgtttgaaggcg
gcacttatacgagagtatgaggacgatacagagtatcagatgttggtccacaatcctcgc
aacactgtgcctgtaactcttcactttagaggagaaaaaatggcaaaggttgtagggaag
ttggcttctgaaaaacccagtcaagaccaaaaggtgacagggatattagtgaagcggaat
ttcaactatcacatcatgcatccaagtgatctgtcaagttacaccgacctagctatggct
acagtgacacagcgactaagtattgcctacacgggtacaatcaacctgctacgttactac
ctcaatcagctatccggggacgtagaacaatacatggctaacgacaaaccagctctcaag
atcttcaaggccgtcactgtgctagtggaacccaagatggctgttgtcgagtgggtagct
aacccagtaactgatatgtatgctgatgctgtggtaaccgtggtactacgagctgagacg
gatcctatgccacataaatatgtcccacctgccctaaaggtggaccgtggccacatcaca
gaatgtctgatcgagatgttcacagacatgtttgggacagagagtgttggaaagttcata
aagggagacaaaatgaccatcacaattgacgacaacaccgccattatcaacattgacact
ttggatgtgaaatgtgaggatgaaactctacaacaagttgtacagaccagtgtatcaaag
ttaatgttagccatttctcctataaaacaagcagcacactga
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