Argopecten irradians (bay scallop): 138330373
Help
Entry
138330373 CDS
T10542
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
138330373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
airr03021
]
138330373
03036 Chromosome and associated proteins [BR:
airr03036
]
138330373
Transcription machinery [BR:
airr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
138330373
Coactivators
SAGA/TFTC/STAGA complex
138330373
Chromosome and associated proteins [BR:
airr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
138330373
STAGA complex
138330373
TFTC complex
138330373
SAGA complex
138330373
SLIK complex
138330373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_DCAF12
PROPPIN
WDR54
Mala_s_1-like
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
138330373
NCBI-ProteinID:
XP_069134055
LinkDB
All DBs
Position
8:complement(41022719..41036280)
Genome browser
AA seq
626 aa
AA seq
DB search
MPLYFSLLTPCTGCTERSVRMKRIRYEQIHSSVHQYLKRRQYSDHEVIEKKEHRWVHDVK
DMALKSTAAGETTTENILLYSSISGDTTVCEQQFSRLKTYLSEAIDPFKEELASILYPLF
VHIYLHLIYNGHKAPAHKFYSRHVKLFESAEELVVMEALHKLYNRTEVISCKEAMEFREH
KFKVCLSQEALDYLMKYLKVDDNMMLLQIFNQHLKVEVTKEDKLTLDLKGGSNDKHVSGG
NERKRPTDIVRLLQQCIKQVREGPPCMSSICFYTFLNAYQGLCTVDISGDRSYLSAGFED
SSVKLWSITPGLIQSYRTPTDPSKLYLSADFWTSESSCGDDGEEDGDKTDGENNREEMKP
QYREVATMRAHNGSVYKTCFTADSEALLSCSEDGSVRLWDLKTHTNRVCYRGHNYPVWDI
DTSSIGNYFASASKDSTAKLWSTDRTYPLRSFIGHSYDVDVVKFHPNCNYLATGSSDRTV
RLWSLQDGKSVRLMQGHRSSVLALAFSPNGQYLASAGDDRRIRVWDLTSGNIYKELKGHI
DTIHCLSFNRDSTLLASGGLDCCIKIWDIRKGVNLSNNNSSNNHNNNNPPDANISPEQLG
SFPTKSAIVTYLQFAQHNLLYAAGSI
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcccctttattttagtttgttgacaccatgcaccggatgcacggagagaagtgttaga
atgaagcgtatacgttacgaacaaatccactcctctgtgcatcaatatctgaagagaaga
caatattcggaccatgaagtgatagagaagaaggaacacagatgggttcatgatgtgaaa
gatatggctctcaagagtacagcagcaggggagacaactacagaaaatatattgttgtac
agcagcatttcaggggacacaactgtgtgtgagcaacagttctccagattaaagacttac
ctgagtgaagccattgacccttttaaggaggagttggccagtatcctgtatccactgttt
gtacatatctatctccatctcatctacaatggacacaaggctccagcacataagttctac
agtcgccatgtgaaattgtttgagagcgccgaagagctagtggtcatggaagccctacat
aaactctataaccgtacagaggtcataagctgtaaggaagctatggaattcagagaacac
aagtttaaagtttgtctgtcacaagaggctttggactacctgatgaaatatctcaaggtt
gatgataacatgatgcttttgcaaatattcaaccaacacttaaaagttgaagtgacaaaa
gaagataaactcactctggatctgaagggaggttctaatgacaagcatgtgtctgggggt
aatgagagaaaacgacctacagacattgtgagactattacagcagtgtatcaaacaagta
cgagagggaccgccctgtatgtcgtccatctgtttctacacattcctcaacgcctaccaa
gggctatgtacagtggacatatccggggacaggagttacctgagtgctgggtttgaggac
tcctctgtgaagttgtggagtatcacacccggtctcatccagtcctatagaacaccaaca
gatccctccaaactttacctgtctgccgacttctggacgtcagagtcatcgtgtggggac
gatggagaggaagacggggacaaaacggatggagagaataacagagaggaaatgaaaccc
cagtaccgcgaggtggctacaatgagagcacacaatggttctgtgtataaaacgtgtttc
actgcggactctgaagctttattgtcatgttcagaagatgggtcagttcgtctttgggat
ctgaaaactcacaccaaccgagtgtgttatagaggtcacaactacccagtctgggacatt
gacaccagttcaattggaaattattttgcctcagcatcaaaggacagtacagccaagtta
tggtcaactgaccgcacctatcctctgaggtcgttcatcggtcactcgtacgatgttgat
gttgtgaagttccacccgaactgtaactacctggcgacgggatccagtgaccggactgtc
cgactgtggagtctacaggatgggaagtctgtccgtctgatgcagggacacagaagttcc
gtcctggctctcgccttctcaccaaacgggcagtacttggcctctgctggtgatgaccga
agaattcgagtttgggacctgacctcagggaacatttacaaggaactgaagggccacata
gatactatacattgtcttagtttcaacagagatagcaccctactggcttcaggtggcctg
gactgctgtataaagatctgggacataaggaaaggtgtcaacttaagtaataataacagt
agtaacaaccacaacaacaataatccgcctgatgcaaatatctcaccagaacaactggga
tcatttccaaccaaatcagccattgtgacttatttacaatttgctcaacacaacctgctg
tacgccgcaggcagcatatga
DBGET
integrated database retrieval system
