Argopecten irradians (bay scallop): 138334017
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Entry
138334017 CDS
T10542
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
airr Argopecten irradians (bay scallop)
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
airr03041
]
138334017
Enzymes [BR:
airr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138334017
Spliceosome [BR:
airr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138334017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
HA2_N
Ank_2
nSTAND3
NPHP3_N
AAA_19
ATPase
AAA_22
DUF913
T2SSE
MukB
TsaE
Motif
Other DBs
NCBI-GeneID:
138334017
NCBI-ProteinID:
XP_069138838
LinkDB
All DBs
Position
10:complement(690562..752713)
Genome browser
AA seq
1562 aa
AA seq
DB search
MAANWKYGRSEPPPGTGGSFARVMQRGDGSSPRPSSTNSSQSFHSFASSEDYQDHGPRPG
QDICIGEEVKIAIHLAIERFRMNESQKELEFPSSLTATERAYIHKLCEGNGLKSKSKGKG
SGRYLTVTKKEGSLSSQSSASFYLARNSRQQILNLLQRYPVSNKERQELIPRVDRNQPNE
VGKELNKTTIGKLNNGVAQVPPPRSDSDLNAFREGLPVFKHRQNILDTLNNNRVILISGE
TGSGKTTQVPQMILDDCSSKNTPCRIFCTQPRRIAALSIAERVALERGEKIGQTVGYQIR
LESKVSPKTLLTFCTNGVVLLRTLMNGDSSFGGVTHVIVDEVHERDRFSDFLLASMDELM
TKHPHLKVILMSAALNTQLFVQFFNNCPVVHIPGTLFTVKEYFLEDILKWTNYSSKAMEK
AKREKDRVSMQQEQLEEWCAKMSIGCSENEEESGKNSQTNSETTENDGNQDKEELQDWIV
KEMDQHLTEIFLTGSEEKFTQMIHLIMSENVSVDYQHSETGVTPLMVTTARGMGDEVEQL
LNLGANVNLHMPNGWTAIDWAKRFQRTEILEMLEAIMLSNDVGPCGDSLVETVDNQLLTD
AEKNLLSLYQNSFDDDKVDIQLILNLIYQIMINYSDGAILVFLPGYDDIVGLRDLIADDT
FFHKYKYLVFTLHSAMQSNDQRRVFKTPPPGVRKIILATNIAETSITIDDVVFVIDSGKV
KEKGQVGFIIYQSLVPYRERAGRFCNISKASALQRKGRSGRLRPGHCYHLFSKVRYSNLM
DFPAPEILRYPLQELCLHTKLLAPKTCSIADFLSKCPEPPTFLLTRNAIHLLKQIDALDT
CEDLTELGHHLADLPVEPCLGKMVLYSVVLKCLDPVLTIVCTLAYKDPFVLPNQPNLKRE
ASMSRRKFAADTFSDHMALLRAFQAWQRARTDGWERSFCDKNYLSSACMEMIVGMRTQLL
GQLRASGFVRARGGGDIRDLNTNSENWAVVKAALCAGSYPNLLRVDRQKVKLTTQKESNV
FFHMSSVVSQIPSSKKTQKNQFIKSLRSDWLFYQEMTRFQRHPMVRTCTMVSPVTVAVFA
GPAKLSPDAVKDKHLNRNLGIRGEFGSEESDSEGEDKEKMTEKPHCSWTNGSASDLTMRR
WALLQLRQKWNSLLLRRMKSPSKTWSQLDESVVRTIVNVLTNEEQTMGLQQPAGIGQRPR
PMTAESIMSGSSGKGNFDFVTPPRNNFQFQQRANTSGMETTSSSSSNSPSTNTSLRGSQS
STPSMSPGPGSPSVNHSEQASFVVMKCNSPKQLDMSMNKGKWTTNAANNKKLNNLFQEGK
TVYLIFSVHGSGHFQGYAKMKSDFLCKKAQDSNHHGPDYCCDVEWIKRMNLPFQSTHHLL
NPWDDNRKVQSTKDGQEIEPHVGDTLVKLWDKNSGAHGKSSPSGNKPQYGGKRGGFHATP
SPEGHVGYQAFGSEYSDYSPHGHRNYYNRGYQDHGNYGGYHGNEGSQKGHRGQGQRGKSS
SKSPMNQGLHFDNYSGYHSGGYQDGGVVPGTEYGPFSYHQRGQGSGGHGGHRRGNNRSGN
RR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaactggaaatacggcagaagtgaacctccgccagggacagggggttccttt
gccagggtaatgcagagaggtgatggatcttctcctcggccgtccagtaccaacagttcc
cagagtttccatagctttgcctctagtgaggactatcaggatcatggacctagacctggc
caagatatctgtatcggggaggaagtcaagatagctattcatttagctattgagcgcttt
cgtatgaatgaaagtcaaaaagaacttgagtttccatcttcactgacagccacagagaga
gcatatatccataaactgtgtgaaggaaatggattgaagtctaagagtaaagggaaggga
agtgggcgatatctcactgttaccaagaaagagggcagcttgtcatcccagtcgtctgcc
tcattctacctagcaaggaatagtcgtcaacaaatccttaatctgctgcaaaggtacccc
gtctccaataaggaacgtcaggaattgattccaagagtggatagaaatcaaccaaatgag
gttggtaaagagctgaacaaaaccactataggcaaactcaataatggagttgcacaggta
ccaccacctcgcagtgattcagatctgaatgctttccgggagggcctgccggttttcaaa
cacagacagaatattctggataccctcaataataacagagttatattgatatctggtgaa
actggatcaggaaagactacacaggttccccagatgatattagatgactgtagtagtaaa
aatacaccttgtagaatattctgtactcagccaaggaggatagctgcccttagtattgct
gaaagggtagctctggagaggggagagaaaattggccagactgttggatatcagatacga
ctggagagcaaagtgtctccgaaaactttactcacattttgtactaacggtgtagtactt
ctgcgtaccctgatgaatggagactcctcttttggtggtgtaacccatgtgattgtggat
gaagttcacgaaagggacaggttcagtgatttcttgctggcatccatggatgaactgatg
acaaaacatcctcatttgaaagtgatcctaatgagtgctgctttgaatacacaactcttc
gttcagttttttaacaactgtccggttgtgcatatacctggcacactgtttactgtaaag
gaatatttcttagaagatatattgaaatggacaaactatagcagcaaagcaatggaaaaa
gcaaaaagggagaaggatagagtgtcaatgcagcaggaacagttggaggaatggtgtgca
aagatgagtattggctgttcagagaatgaggaagaatctggtaaaaacagccaaaccaac
tctgaaaccactgaaaatgatggcaatcaggataaagaagagcttcaagactggattgta
aaagaaatggatcagcatcttactgaaattttcttgactggaagtgaagagaaatttacc
cagatgattcatctcattatgagtgagaatgtcagtgtggactatcagcattcggagacc
ggcgttacacctctaatggtgactactgcccgaggcatgggtgatgaagtagaacagcta
ctaaatctgggagctaatgttaaccttcacatgcctaatggctggactgctatcgactgg
gccaagcgcttccagagaacagaaattttagaaatgttagaagctataatgttgtcgaat
gatgtagggccttgtggggactcgctggtagagacagttgataaccagttgttgacagat
gctgagaagaacttgttgtcactgtaccaaaactcttttgatgatgataaggtggatatc
cagctcatcctcaatctcatctaccagatcatgatcaactacagtgatggtgctattttg
gtgttcctccctggatatgatgatattgttggtctccgagatttgattgcagatgacaca
ttcttccacaaatacaaatacttggttttcactctacattctgccatgcagtcaaatgac
cagaggcgagtgtttaaaacaccaccaccaggagtgagaaaaattattctggccaccaat
atagctgagacaagtattaccattgacgatgtggtgtttgttattgattctgggaaagtg
aaagagaaagggcaggtaggttttataatatatcaaagcctagtgccttacagagaaagg
gcaggtaggttttgtaatatttcaaaggctagtgccttacagagaaagggcagatcgggg
agacttcgacctggacactgttaccacttgttcagtaaagtacgctactctaatctcatg
gacttcccagctccagagattcttcgctatcctctccaggaattgtgccttcatacaaag
ctactagcacccaaaacctgttcaattgctgatttcttgtcgaaatgcccagaacctcca
accttccttctgaccagaaatgcgatacatcttctaaagcaaatagatgcccttgatacc
tgtgaggatttgacagagttaggacatcacctggctgaccttcctgtggagccgtgtctg
ggcaaaatggtgctctactctgttgtcctcaaatgtcttgacccagtcctcaccattgtg
tgtacattagcctacaaagacccttttgtgttgcccaatcagccaaacttgaagagggag
gccagtatgtctcggcgtaaatttgctgctgatacatttagtgaccacatggccctactg
agagctttccaggcatggcagagagccagaactgatggttgggagagaagtttctgtgat
aagaattacctgtcatcagcctgtatggaaatgatcgtaggaatgagaacgcagctgctg
ggccagttgagggcttcaggctttgtacgagcgagaggtggaggagacatcagagatctc
aacactaactcggagaactgggctgtcgttaaagctgccttatgtgctggaagctaccca
aatctgctacgagtagaccgacagaaagtcaaactcaccacacagaaagaaagtaatgtg
ttctttcacatgagctcggtggtaagtcagattccaagttcaaagaagacacagaagaat
cagttcatcaaaagcctgcgttctgattggctgttctatcaggaaatgacacggttccag
cgacatcccatggtgaggacttgtaccatggtgtcccctgttactgtagctgtgtttgct
gggccagccaaactctcaccagacgctgtcaaggacaagcatctcaacagaaatttgggt
atacgaggagagtttggtagtgaagaaagtgatagtgaaggggaggacaaagagaagatg
acagaaaaaccacattgcagttggacgaatggctcggcttcagacttgacaatgagacga
tgggcattgcttcagttgagacagaaatggaacagtcttttgttacgaagaatgaaatct
ccctccaaaacctggtcccagctggatgagtccgtggttagaaccattgtcaatgtgtta
accaatgaggagcaaaccatgggactacaacagcctgctggaatcggtcagcgaccccga
cctatgactgctgagtccatcatgtcaggaagcagtgggaagggaaactttgactttgtt
acacctcccaggaacaacttccaattccagcagagagccaacacaagtggaatggagacg
acatcctccagtagtagcaattctccatcgactaacaccagcctgagaggaagccagtcc
agtacaccgtcaatgagtcctggtccaggctcacccagtgttaaccacagtgaacaggct
agctttgttgtaatgaaatgtaacagtccaaaacaactagacatgtccatgaacaaagga
aaatggaccacaaacgcagccaacaataagaagcttaacaatttgtttcaggaagggaaa
acagtttatctgatattctctgtacatggaagcggacactttcagggctatgccaagatg
aagtcagactttttatgtaagaaggctcaagactcgaatcatcatggacctgactactgc
tgtgatgttgagtggatcaaaaggatgaacttgccattccaaagtactcatcacttactg
aatccctgggatgacaacaggaaagtacagagcactaaggatggccaggagattgaacca
cacgtaggagacaccctggtcaaattatgggacaagaactctggtgctcatggtaaatct
tcaccctccggtaacaagccacaatatggagggaagagaggaggtttccatgctacacca
tcgcctgaaggtcatgtgggttaccaggcgtttggcagtgaatacagtgactactcacca
catggtcatcgtaactattacaacagaggataccaggatcatggaaactatggaggctat
catggcaacgaagggtcacaaaaaggtcacagaggtcaaggtcagaggggcaaatcatct
agtaaatcacctatgaatcagggactgcattttgataactatagtgggtaccacagcggt
gggtaccaggacggtggggtagtccctgggactgagtatggaccattcagctatcaccag
agaggtcaagggtcaggaggtcacggaggtcacagaagaggaaataacagatcagggaat
aggagatag
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integrated database retrieval system
