Argopecten irradians (bay scallop): 138334841
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Entry
138334841 CDS
T10542
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138334841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138334841
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
138334841
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
138334841
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
138334841
NCBI-ProteinID:
XP_069139709
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All DBs
Position
11:complement(15435729..15442991)
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AA seq
198 aa
AA seq
DB search
MSAPMEKVCVPGQRICRHDENIVSGNGSYIRSGFLHASLAGYLTTRSENDQVIVEVKADT
ELNIVPTVDAVVTTRVTNVNPRFCKCSILSVGGITLKEPFRGLIRKEDVRATEKDRVEMY
KCFRPGDIVVARVMSLGDAHSYVLSTAENELGVVMATSESGANMTPVSWCKMKCPKTLAE
EYRKVAKVQANYIDYSDT
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcccccatggaaaaggtgtgtgttccaggtcaaagaatatgtcgacatgatgaa
aatattgtgtcgggtaatggcagttacatcagatcgggatttctacatgctagtttagct
ggatatttaactacaagatctgaaaacgaccaggtaattgtggaagtaaaggcagacact
gaactcaatattgtaccgacagttgatgcagttgttaccacaagagtgacaaatgtaaat
ccacgattttgtaaatgttccatcttaagtgttggaggtattactctcaaggaacccttc
aggggcctgatcagaaaagaagatgtgcgagctacagaaaaagaccgagtagaaatgtac
aagtgtttccgaccaggtgacatagtggtggcaagagtgatgtcgttaggagatgcccat
tcttatgtattatctacagcagagaatgaactaggtgttgtcatggcaaccagtgagtct
ggcgccaacatgaccccggtgagctggtgtaagatgaagtgtccaaagacattagcagag
gaatatcgcaaagtggcaaaagtgcaagcaaattatatagactactctgatacgtga
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