Argopecten irradians (bay scallop): 138335397
Help
Entry
138335397 CDS
T10542
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03020
RNA polymerase
airr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
138335397
09124 Replication and repair
03420 Nucleotide excision repair
138335397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
airr03021
]
138335397
03400 DNA repair and recombination proteins [BR:
airr03400
]
138335397
Enzymes [BR:
airr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138335397
Transcription machinery [BR:
airr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138335397
DNA repair and recombination proteins [BR:
airr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138335397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
138335397
NCBI-ProteinID:
XP_069140562
LinkDB
All DBs
Position
11:34604778..34625081
Genome browser
AA seq
1175 aa
AA seq
DB search
MYGQDEEMEDESDDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS
PQIDLQAEAQHTSGTIETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA
PLYVDITKTVVKEGEDPIETTHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPG
GYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAFKTEIRSCLEHSSRPTSTLWVNMMAK
GGGGAKKSAIGQRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVK
PSLDEAFVIQERNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA
YFLGYMVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAFLFRGMFRNLMKEVRMYSQKF
IDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLSHL
RRLNSPIGRDGKLARPRQLHNTQWGMVCPAETPEGGAVGLVKNLALMAYISVGSQPSPIL
EFLEEWSMENLEEVAPSSIQDATKIFVNGCWVGIHRDAEHLMNTLRKLRREMDIIVSEVS
MIRDIRDREIRIYTDAGRICRPLLIVDNQKLLLKQSHIKQLKQKEYNSYSWQDLVASGVV
EYIDPLEEESIMLAMTPDDLSEDKDVQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR
NTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINTVVA
IATYTGYNQEDSVILNASAIERGFFRSFFFRSYKDAEAKKGLDQEELFEKPDREHVQGMR
PAIYDKLDEDGIISPGLRVSGDDVLIGKTMTLPPNDDELDATARRFSKRDASVFMRRSET
GIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGI
TPDIIINPHAIPSRMTIGHLFECLQSKVAANKGEIGDATPFNDAVNVQKVSNLLHQYGYH
QRGNEILYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRARD
GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHLCNFCGLIAIANLRNQTFECRGCK
NKTQISQIRMPYACKLLFQELMSMSIAPRIMVLPG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatggacaagatgaagagatggaggatgaaagtgatgacatcactccagatctctgg
caggaggcctgttggatcgtcatcagctcgtatttcgatgagaagggattggtgcgacaa
caactggattccttcgacgagtttatccagatgtctgtacagcgtatagtggaggactcg
ccgcagattgacctgcaggccgaggcacaacacacctcggggaccatagagacacctcca
agatacctgctgaagtttgagcagatttatttatcaaaaccaacacattgggaaaaagac
ggcgcaccgagtcctatgatgcccaatgaggcaagactgcgaaatctcacctattcggcc
cctctgtacgttgacattactaaaacagttgtgaaggaaggcgaggatcctatagaaaca
actcaccaaaagacttttatcgggaaaatcccaattatgttacgatccacatactgtcta
ctgagtggcctcacggatcgtgatttaacagaattaaacgagtgtccactggacccggga
ggatatttcatcatcaacgggtcagaaaaagtgctcatcgctcaagagaaaatggcaacc
aacacagtttatgtctttcaacaaaaagattctaagtacgcctttaaaacagagatacga
tcgtgtctggagcattcatccagacctacgagtacactttgggttaacatgatggccaaa
ggaggtgggggggcaaagaagagtgctattggacagagaatcataggtattctgccatac
atcaaacaagagattccaatcattattgtattccgagctctgggattcgtgtcggacaga
gatatcctggaacacatcatctacgactttgatgatccagagatgatggagatggtaaaa
ccctcgctagacgaggctttcgtgatccaggagagaaatgtggctctgaatttcatcggt
tctcgtggtgctcggccaggtgttactaaggagaagagaattaaatacgcccgtgaaatt
ctgcagaaggaaatgttaccccacgttggagtcagtgacttctgtgaaacaaagaaagcc
tactttctggggtacatggtgcaccgtctactactggcagccctgggacgacgggaggtg
gatgatcgagatcactatggcaacaaaagacttgacttagctggacctttattggccttc
ctgtttagaggaatgttcagaaacctgatgaaggaagtcagaatgtactcacagaagttc
atagacagagggaaggactttaacttagagttagccatcaaaactcgcatcattacagac
ggattaaaatactccttggctacagggaactggggcgaccaaaagaaggcccatcaagcc
agagccggtgtgtctcaggtgttgaacagactgacgtttgtgtcaactttatcccattta
cggaggttgaattccccgattggtagagacggtaaacttgctcgtcctcgacagttacac
aacacgcaatggggaatggtgtgtcctgctgaaacaccagagggtggtgctgtaggcttg
gtaaagaatcttgccctgatggcgtacatctctgtcggctcccagccctcaccaattctg
gagttcttggaggaatggagtatggaaaacctggaggaagtcgcaccgtcatcaatacag
gatgctacaaagatatttgtgaatggctgttgggtaggaatccacagagatgctgaacac
ttgatgaacacgctcagaaaactccgcagggagatggacatcattgtgtcagaggtgtca
atgatccgagatatacgtgaccgagaaattcggatttacacagacgctggaaggatctgt
cggcctttactgattgtggataaccagaaactattgttaaaacaaagtcatattaaacag
ctaaaacagaaggagtacaacagctacagttggcaggacctggtggctagtggagttgtg
gagtacattgaccccctagaggaggagtccatcatgctggctatgacccctgatgacctt
tcagaggacaaagatgtccagtactgttctacctatacccactgtgagatccatccagcc
atgatccttggcgtctgtgcctccatcatcccattccctgatcacaaccagtccccacgt
aacacataccaatccgctatgggtaaacaggccatgggtgtatatatcaccaacttccac
gtaagaatggacaccctggcccacggactcctctacccacagaaacctcttgtcaccact
cgttctatggaatacctacgcttcagggaacttcctgcaggtatcaacactgtcgtcgcc
atcgcaacctacacaggctacaaccaggaagattctgtcattctcaatgcatcagctatt
gagcgaggtttctttagatcatttttctttcggtcttacaaggacgcagaagccaagaag
gggctggaccaagaagagttgtttgagaaacctgaccgagagcatgttcagggtatgagg
ccagctatttatgacaaattagatgaggatggtatcatatctccgggactcagagtgtca
ggggacgacgtccttatcggcaagacgatgactctgcctcctaacgatgatgagcttgat
gctacagccagaagattttctaagcgagatgccagtgtgttcatgaggagaagtgaaact
ggtatcatagatcaggtgatggtcaccattaaccaggaaggctataagttctgtaagatc
cgtgtgaggaccgtgaagacgccccagattggagacaagtttgccagtcgtcacggacag
aagggaacctgtggtatcacctacagacaggaggacatgccatttacctgtgagggaatc
actcctgatattatcattaaccctcatgctattcccagtagaatgaccattggccatttg
ttcgagtgcctacagagtaaggtcgcagccaacaagggtgagataggtgatgcaacaccc
ttcaacgatgccgtcaacgtacagaaagtgtcaaacttactccatcagtacggttatcac
cagagaggaaacgagatcctttacaatggcttcacaggaagaaaactaaatgcccaagtg
ttcctggggcctacctactaccagcgtctgaagcatatggtggacgataagatccactcg
cgagctcgaggaccactacagatcctcaacagacaacccatggaaggcagagccagggat
ggtggtttacgtttcggagagatggaacgtgattgtcaaattgcccacggtgctgctcag
ttcctgcgtgagcgactgtttgaggcgtccgacccctatagagtacatctgtgtaatttc
tgtggattaatcgccatagctaacttacgtaaccagaccttcgagtgtcgaggatgcaag
aacaaaacacagatctcccagatccgtatgccatatgcctgcaagttgctcttccaagag
ctcatgtctatgagtattgctccgcgtatcatggttcttccggggtag
DBGET
integrated database retrieval system
