Argopecten irradians (bay scallop): 138336100
Help
Entry
138336100 CDS
T10542
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03013
Nucleocytoplasmic transport
airr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138336100
03015 mRNA surveillance pathway
138336100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138336100
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138336100
mRNA cycle factors
P-body specific factors
138336100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
138336100
NCBI-ProteinID:
XP_069141501
LinkDB
All DBs
Position
12:complement(20788937..20826929)
Genome browser
AA seq
1405 aa
AA seq
DB search
MSEKEVTEKKEENGSKHSSGARAKQSNEGRGSNKVYDDRVTAKGAKSSTSGGTPNKGGKN
DSRKSGSSGHDRETNRNRNNSQYDRSGYRTSDRGSDRGTDRDGGGRGGRSGNKGGGDGRE
KGGNSSRGSGRGSSGGSNRDREQTPRKSDVRDRREDRGEKGDGRDSQKKSSSKDSKAAHM
SSAADLEAQWQKEEEEKRKKEEEEERIRLEEIRKKEEEEKRKEEEAQRQKEEEMKCIQDY
IAECRERTESKKLLREKNLAAADQRPDERFFTKLDSNLKKNTAFVKKLKNLTESQKEMLT
REFNGLNLTKYVGEVAASITEAKLKMSDIPCAVHISSIMFQRYQEFPAALLENIQKFLLG
KKDEKISNPSKYRVDLRFFAELVSVGLFSKKEGLVVVGKQLEQLVNNDHEEHNNLAILSS
FCKHCGDDYMGLISRKYRLLAEKYSLEIPGSQMLPPEKQKACRNLMKDYFLSLCKHLVRV
YKDLKNIERHNRRTLQTKGELSTERRESYENALATYQKLHGNTSTYADLLDEDMPDLPEE
DLMKDEESGFDVFDPSKNAEFQYVGDSTLFEDEDARAFYESLPDLRAFIPGICYKESEQS
TGKDETKDVETGLEEDMENLKVEDVEREMETEQQIAEVENKEAEEEAAKGKDQEEEGTHP
VEEDYSALHDLDVDDDNDTGNLMKVQLDAYLLSLPNCVNRDLLDKASIEFCMNFNNKANR
KKLVKALFTVHRTRYDLLPFYSRMVGTLYPCMPDVANDLVQLLKGDFKWHVRKKDQINIE
SKLKTVRFIGELVKFKLYPKSEALHCIKSLMFDFTHHNIEMACSLLETCGRFLYRSQDSH
HRTKIYLDVMMRKKAALHLDSRYTTMIENAFYYSNPPDVPQTTRKIRPPLHEYIRKLLYK
DLSKVTTEKVLRQMRKLNWDDHEIAFYATKSLIAVWNVRYNSIHCAANLLAGLAPYHEHV
AIQVVDGVLEDIRIGMEVNHPKYNQRRVSCAKFLGELYNYRMVESTVIFKTLYSFITFGV
SFGDNGQSVLDPPEHLFRIRLTCVVLETCGQYFDKGSSKKKLDCFLIYFQRYYWFKRQCN
IWTEDRPFPIDVENLMQDTIEAIRPKSQVPQNYEEASKAAEDLENEYKQKLASVLPIVDT
DEGNSSEADEGGLMTIQETEEMDDLSNSLSNTEDDSETSGDDRSQSQRSHTGSMGNRDQG
EEGEGVEMSENEEDVMLDSDAEDDEITLLTGGPRFVKCSEDDDFMTAFDKMMTDNIQARN
QESLKVPQLDIAVPMHLRDKNKKAACSNFLDQSQEVPKANKSIDFVLMTRKGNKQQFTNL
NVPISAEFAAKYKEREHAEKMEKERMKQVVLGIHERQEEEDYQEMIAALNRPMPLVNANR
DRRLRNYQHPKGAPDADLIFGSKKR
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaggaggtcactgagaagaaggaagagaatggctctaaacactcctcgggt
gctagagctaagcagagcaatgaaggcagaggtagcaacaaggtatatgatgatcgagtg
acggccaaaggtgcaaagtctagtacatctggaggaaccccaaataagggaggcaagaat
gacagcaggaagtcagggtccagcggtcacgacagggagacaaatagaaatagaaacaat
tctcagtatgatcgcagtggctaccgaaccagtgatcgtggatccgatagagggacagac
cgtgatggtggtggccgaggaggaagaagtggaaataagggaggaggagatggaagggaa
aagggaggcaatagctcccgagggagtggcaggggctcatctggaggttcaaacagggat
agagaacaaacaccaaggaaatcagatgtaagggacagaagagaagacagaggggagaag
ggagacggaagggacagccaaaagaagtcttcttcaaaggattctaaggctgctcatatg
agctcagcagcagatctagaggctcagtggcagaaagaggaagaagaaaaaagaaagaaa
gaagaagaagaggaaagaatcagactggaagagatcagaaagaaagaagaggaagaaaaa
agaaaagaagaagaagcccaacgacaaaaagaagaggaaatgaaatgtatccaggactac
atagcagaatgtagagaaaggacagagagtaaaaaacttctgagggaaaagaatctggca
gcagcagaccaaagaccagatgagaggtttttcacaaagcttgattccaacttgaagaaa
aacactgcttttgtcaagaaattgaaaaatctgacagaatcccaaaaagagatgttgaca
agagagttcaacggtcttaacctaacaaaatatgttggtgaagtggctgcatccatcaca
gaagctaaattgaagatgtcagatattccatgtgcagttcacatcagtagcatcatgttc
cagaggtaccaggaatttcctgctgcactactggaaaacatacagaagtttcttcttggg
aagaaagatgaaaagatcagtaatccaagtaaatatcgagtggaccttcgattctttgct
gagttggtgtcggtgggactgttctctaagaaggagggtttggttgtggtggggaaacag
cttgaacagctggtcaataatgaccatgaggaacacaataatttggccatcctgtccagc
ttctgcaaacactgtggggatgactacatggggctcatctccaggaagtacagactgctt
gccgaaaagtattcacttgaaataccagggagtcagatgctgccaccagagaagcagaag
gcttgtcggaatctcatgaaggactactttttgtctttgtgtaaacatttggtacgagtg
tataaagacctgaaaaacattgaacgacataacagaaggactcttcagacaaagggagag
ctgagcactgagagaagagaaagctatgagaatgcattagcaacttatcaaaagcttcat
ggcaacacttctacatatgctgatttgttagatgaagacatgccagacttaccagaggaa
gatctgatgaaagatgaagaatctggatttgatgtgtttgacccttcaaagaatgcagag
tttcagtatgttggtgatagtactttgtttgaagatgaggatgcacgagccttctacgaa
tccctgcctgatcttagagcttttatacccgggatttgttataaggaaagtgaacagagt
actggtaaggatgaaaccaaagatgtagaaacaggcttggaggaagacatggagaatttg
aaagtggaggatgtagagagagagatggagacagaacaacagatagctgaggtggagaat
aaggaagctgaggaggaggcagctaaggggaaagatcaggaggaggaggggacacaccct
gtagaggaggactacagcgctctccatgatctggatgttgatgacgataacgacaccggt
aatctgatgaaggttcaactagatgcttacctcctgtcactccctaactgtgtcaacagg
gatctgctggacaaggctagtatagagttctgtatgaatttcaacaacaaagccaacagg
aagaagttagtgaaagcattatttactgtacacagaaccaggtatgatttgctgccattt
tactctcggatggttggcactctctacccatgtatgcctgatgtggctaacgaccttgta
cagcttctcaaaggagactttaaatggcatgttaggaaaaaggatcagatcaacattgaa
tccaagttaaaaactgttagatttattggagagctagtcaaattcaagttatatcccaaa
tcagaggcactgcattgtataaagtctctgatgtttgactttacccatcacaacattgaa
atggcctgctccctccttgagacgtgtggcaggttcctctacagatctcaagactctcat
cacaggaccaagatttatctggacgtgatgatgaggaaaaaggcagctcttcacttagac
agccggtacacaacgatgatagagaatgccttctactacagtaatcctccagacgtcccc
cagactacacggaagatccgaccacctctccacgagtatatcaggaaacttctgtacaag
gacctctccaaggtcaccacagaaaaggtcctgagacaaatgaggaaattgaattgggat
gatcatgagattgcgttttatgccaccaagtcactgatagcagtatggaatgtgcgttac
aactctatacactgtgcagccaacctcctagctggtctagctccttaccatgaacatgtg
gctatacaggttgtggatggagtgctggaggatatcagaataggaatggaggtgaaccac
cccaagtataaccagcgacgtgtcagttgtgccaagttccttggagagctgtataactat
agaatggtggagtctactgtcatcttcaaaaccctctactctttcatcacgtttggagtg
tcatttggtgacaatggtcagtccgtgctggaccccccagaacacttgttccgtatccga
cttacctgtgtggtgctagagacatgtggacagtactttgacaagggttcaagtaaaaag
aaactggattgtttcctcatctactttcagcgatattactggttcaagagacaatgtaac
atttggactgaggacaggccattccctatcgatgtggaaaatttgatgcaggacacaatt
gaagctatacgccccaagtctcaggtccctcagaactacgaagaggctagcaaagccgct
gaggacctggagaatgagtacaaacagaaactagcatctgtgttacccatcgtagacaca
gacgaagggaacagtagtgaagcagatgagggaggcctgatgactatacaggagacagag
gaaatggatgatctcagtaacagtttgtccaacactgaggatgatagcgagacgagcggg
gatgaccgaagtcagagtcagcgaagtcacacaggcagcatggggaatcgggatcagggc
gaggagggagaaggtgtcgagatgagtgaaaatgaagaagatgtcatgttggattcggat
gctgaggatgatgagattaccttgttaactggaggtcccaggtttgttaagtgctcagaa
gatgacgatttcatgacagcatttgataaaatgatgacagacaatattcaggcaagaaac
caggagtcactcaaagtgccacaactagacatagccgtccctatgcacctgagggataaa
aacaaaaaggcagcatgctctaacttcttagatcagagccaggaggtacctaaggcgaat
aagtctatagactttgtactgatgaccaggaaaggcaacaaacagcagttcaccaatctg
aatgtgcccatttccgctgagtttgctgccaagtataaggaaagggaacatgcggagaag
atggagaaagaaaggatgaagcaagtggtacttggaatccatgaacgccaggaggaggag
gactaccaagaaatgatcgcagcattaaacagaccaatgccattggtaaatgctaacaga
gacagaaggttaaggaattaccagcatcccaaaggtgctccggatgctgacctcatattt
ggctcaaagaaacgttga
DBGET
integrated database retrieval system
