Alistipes indistinctus: AI2BBH_08080
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Entry
AI2BBH_08080 CDS
T06978
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ait
Alistipes indistinctus
Pathway
ait03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ait00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AI2BBH_08080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ait03400
]
AI2BBH_08080 (mfd)
Enzymes [BR:
ait01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AI2BBH_08080 (mfd)
DNA repair and recombination proteins [BR:
ait03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AI2BBH_08080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCG53762
LinkDB
All DBs
Position
complement(1020273..1023740)
Genome browser
AA seq
1155 aa
AA seq
DB search
MTAQQLQELFLSQPSYRELLRQLENRGTTVGLDSLVGSSYSLVAAGAVRERGGVHVFVME
DRDAAGYLYNDLSPFLDEERLLFFPTAYKRSIQFGQEDPSGIVQRTAALNAVKNFTDGYL
AICTYPEALVEKVVGMQRLRESILTIRVGDTLSTSTIEEILADNGFERVEFVYEPGQYSV
RGGIVDIFSFSDNKPYRIDLFGDEVDSIRHFDLSSQLSVDRLQQIEVVPNLKDAVSGRER
VSFPAFAAGATYWLDDGEYTLKRFQDIRTKLLGELDDPAQIDTLVTGRKGFLADTAGATM
VLLKDNCQERAADATISFHTSPQPQFNKKFELLADDIRDNREKGYTTCLLTENKAQIERL
RNIFNSMGERDVPFEAVGVTLHAGFIDHASRYCFYTDHQLFDRYHRYQIRGGIDRSESLT
IQELNELKVGDYVVHIDHGVGRFGGLTRTVENGKVHEAIKLVYRDNDVLLVNVHALHRIS
KYKDKDSEPPKIYKLGSGAWQRMKQNTKKAVKDIARELIALYARRKASDGFAFSPDSFLQ
YELEASFIYEDTPDQQAATQAVKADMEARTPMDRLVCGDVGFGKTEVAIRAAFKAVTDSK
QVAVLVPTTILALQHYRTFSERLKEFPVRIEHLSRAKSTAEVNQILKDVADGRIDILIGT
HKILGKNVGFKDLGLLIIDEEQKFGVAAKEKLRQLRADVDTLTMTATPIPRTLQFSLMGS
RDLSVISTPPPNRQPVSTESHLFDEELIREAVDYELQRGGQVYFVHNKVETIDNVRRMVG
QLCPKARVAVGHGQMPAQQLEKLMMDFIYGEFDVLVATTIVESGVDVPNANTIIINNAQN
FGLSDLHQLRGRVGRSNRKAFCYLLTPPEEMLSSDARRRLRAIEEFSDLGAGFNIAMQDL
DIRGAGNLLGGEQSGFIADIGFETYQKILSEAMAELREEEFAKAAEAGRTIASGDVALQG
GSVHPVPGGSIAGQADMDGSAFPGVTSPQDGGGTVAYISDCQIETDREAVIPDSYVSSAG
EKLRLYRELDSITDEERLARFESQLTDRFGDIPTATHELFDIVRLRWICIRLGFEKAIVK
NGIMILQFVHNQKSAYYKSELFGRILRVSTRPGSKFIFRQNNNKLSVVVRSIKDIAAAAA
TLRELETEAAKQPTA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctcagcagttacaggaactgttcctgtcgcagccatcctaccgggagttgctg
cggcagttggagaaccggggaacgaccgtcgggttggattcgctggtcggttcctcatat
tcgctcgtggctgccggtgccgtgcgcgagcggggcggcgtccatgtgttcgtgatggag
gaccgcgatgcggcgggttacctgtacaacgacctttccccttttctggacgaagagcgg
ctgctctttttcccgaccgcctacaaacgttcgatccaattcgggcaggaagatccttcg
ggcatcgtgcagcgcaccgctgccctcaatgcggtaaagaactttacggacggttacctg
gcgatttgtacctaccccgaggcgctggtcgagaaggtggtgggcatgcaacgcctgcgg
gagagcattctcacgatccgtgtaggcgatacgctgtcgacttcgacgatcgaggagatt
ctcgccgataacggtttcgagcgcgtcgagttcgtttatgaaccggggcagtattcggtg
cgcggcggaattgtcgacatcttttctttttccgataacaagccctaccgaatcgacctg
ttcggcgacgaagtcgattcgatccgccatttcgacctctcttcgcagttgtcggtagac
cgcctgcagcagatcgaggtcgtgcccaacctcaaggatgccgtttcgggccgggagcgg
gtttcgtttccggcttttgccgcaggggcgacctattggctcgacgacggcgagtatacg
ttgaagcgtttccaggatatccggaccaaactgctcggtgagctggacgatccggcgcag
atcgatacgttggtaacgggccgtaagggattcctagccgatacggccggtgcaacgatg
gtactgctcaaggataactgccaggagcgcgccgccgatgcgacgatctcattccatacc
tcgccgcagccgcagttcaacaagaagttcgaactgctggccgacgacatccgcgacaac
cgcgaaaagggctataccacctgcctgcttaccgagaacaaggcgcagatcgagcgcctg
cgtaacattttcaactcgatgggcgagcgcgacgtgccgttcgaggcggtcggcgttacg
ctgcacgccggttttatcgaccacgcctcgcggtattgtttctataccgaccaccagctt
ttcgaccggtaccaccgctaccagattcgcggcgggatcgaccgcagcgaaagcctcacg
atccaggaacttaatgagttgaaagttggcgactatgtcgtgcatatcgaccatggggtg
ggacgtttcggcggcctgacgcgtacggtcgagaacggcaaggttcacgaggcgatcaaa
ctggtctaccgcgacaacgacgtgctgctggtcaacgtccatgcgctgcaccgcatcagc
aagtataaagataaggacagcgagccgccgaagatttacaaactgggttcgggcgcatgg
cagcgcatgaagcagaacaccaagaaggcggtcaaggacattgcccgcgaactgatcgcg
ctttatgcccggcgcaaggcgagcgacggctttgcgttttcgccggatagctttctgcaa
tacgagctggaagcgtcgttcatttacgaggacacgcccgaccagcaggctgcgacgcag
gctgtgaaagccgatatggaggcgcgcacgccgatggaccggctcgtgtgcggcgatgtg
ggcttcggcaagaccgaagtggcgatccgcgccgctttcaaggccgtcaccgattccaaa
caggtggccgtgctggtgcctacgacgatccttgcattgcagcattaccgtactttcagc
gagcggctcaaggagttcccggtgcgcatcgagcacctgagccgcgcgaagagtaccgca
gaggttaaccagatattgaaggatgtggctgacggccggatcgacatcctgatcggcacg
cacaagattctgggcaagaatgtcgggttcaaggacctcggattgctgattatcgacgaa
gagcaaaagttcggggtggcggccaaggagaagctgcgccaattgagggccgacgtggac
acgctgacgatgaccgctacgccgattccgcgtacgctgcagttttcgctgatgggttcg
cgcgacctgtcggtcatctcgaccccgccgcccaaccgacagccggtctcaaccgagagc
catctgttcgacgaggagctgattcgcgaggcggtcgattacgaactccagcgcggcggg
caggtctatttcgtgcacaacaaggtcgagacgatcgacaatgtccgccgcatggtcggg
caactttgcccgaaggcgcgcgtggcggtgggacacgggcagatgccggcccagcaactc
gaaaagctgatgatggactttatctacggcgagttcgacgtgctggtggccacgacgatc
gtcgagtcgggcgtcgacgtgcccaatgccaatacgatcatcatcaacaacgcgcagaac
ttcggactgagcgatctgcaccaactccggggccgtgtggggcggtcgaaccgcaaggct
ttctgttacttgctcacgccccccgaggagatgctttcgagcgacgcacggcggaggctg
cgggccatcgaggagttttccgacctgggggccggcttcaatattgcgatgcaggacctc
gatatccgtggggcgggcaatctgttgggtggtgagcagagcggatttatcgccgatatc
ggctttgagacctaccagaaaatcctctcggaagcgatggccgaactgcgcgaagaggag
tttgccaaagcggccgaggctggccggacgattgcttccggcgacgttgcattgcagggc
ggatctgtgcatccggttccgggcggttccatagccgggcaggcggacatggacggttcg
gcattccctggcgtgacatccccgcaagatgggggggggaccgtcgcctatatttccgac
tgtcagatcgagaccgatcgcgaggcggtgattcccgacagttatgtgagcagtgccggc
gagaagctgcggctctaccgcgagttggacagtattaccgatgaggagcgccttgcccgg
ttcgaatcgcagttgaccgaccgtttcggcgacattcccactgcgacgcacgagctgttc
gacatcgtgaggctcaggtggatctgtatccggctcggattcgagaaggcgatcgttaaa
aacggcatcatgattctgcaattcgttcacaaccagaaatctgcctattataaaagcgaa
cttttcgggcgaatcctgcgggtttcgacgcggccgggcagtaaatttattttccgccag
aacaataataagctctctgtggtagttagaagtattaaagatatcgcagcggccgccgcg
acgctccgggaactggagaccgaggccgcaaaacagccgaccgcatga
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