Alistipes indistinctus: AI2BBH_10900
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Entry
AI2BBH_10900 CDS
T06978
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ait
Alistipes indistinctus
Pathway
ait03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ait00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AI2BBH_10900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ait03021
]
AI2BBH_10900 (rpoC)
03400 DNA repair and recombination proteins [BR:
ait03400
]
AI2BBH_10900 (rpoC)
Enzymes [BR:
ait01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AI2BBH_10900 (rpoC)
Transcription machinery [BR:
ait03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AI2BBH_10900 (rpoC)
DNA repair and recombination proteins [BR:
ait03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AI2BBH_10900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BCG54044
LinkDB
All DBs
Position
complement(1411948..1416210)
Genome browser
AA seq
1420 aa
AA seq
DB search
MSFKKDNKAQSGFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFRSLPSKI
GYLLGIPTKKLEAIIYYERYVVVQPGAAAVNGVAELDLLAEKEYLDIVNALPKGNQQLDD
SDPDKFIAMMGAEAIYTLLQRVDLDELSYSLRHKASTETSQQRKAEALKRLHVVEAFRES
REVNKPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
DVILRNEKRMLQEAVDSLFDNSRKSNAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHEMGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDRKDPVI
WDILENVIKGHPVLMNRAPTLHRLGIQAFQPKLIEGKALQLHPLACTAFNADFDGDQMAV
HLPLGNAAILEAQLLMLGSHNILNPANGAPITVPSQDMVLGLYYITKERAGSKGEGLAFY
GPEEAIIAYNENRAGLHAKVKVMADTLDENDQPVKKLIDTTIGRILFNQVVPKEVGYLNE
VLTKRSLRDIIALVMKKAGADKAAEFLDAIKNLGYQMAFKGGLSFNLDAVIIPEEKDKLV
QEGYERVDEVMESYNMGLITNNERYNQIIDIWTNINMKLTKTVLDHLTSDMQGFNPVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQVIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVAQDVIISEEDCGTLRGLTATAIKRNEDVVQTLYERI
IGRTTVHDVHNPHTGELIVAAGEEITENIAAAIDAAGIESVDIRSVLTCESRKGVCAKCY
GRNLATARMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGVATDNSVVSRYEGRLE
IDDLRTVKSKNEAGKEVNMVISRLAEMRIVDVNTDIVLYTHNLQYGSTLYMNDGDLVKKG
DLICEWDPYNAVIISEYDGKIAFENVIENVTYRDEFDEQTGFREKVIIESKDKTKNPVIK
ILDKKGDEQKQYNLPVGAHIVVKEDATIKAGEILIKIPRAIGKAGDITGGLPRVTELFEA
RNPSNPAIVSEIDGEISFGKIKRGNREIVVTSKMGDVKRYLVPLSRQILVQENDYVRAGT
PLSDGAITPGDILAIQGPTKVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMNKVQIDD
PGDTRFLPEQIVDKWEFMEVNDELYDKVVVTDPGESPTMRAGMIITVRKLRDENSVLKRK
DQKLVEVRDVIPATSNQILQGITRAALQTSSFMSAASFQETTKVLNEAAILGKSDPLEKL
KENVICGHLIPAGTGEPKYQSILVGSMDDYNSMVGTQSQE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaagaaagacaacaaggcacaaagcggattctcgaagatttcgattggtctg
gcatctcccgaggagattctggaaaattcgagcggagaggtcctcaagcctgagacgata
aactaccgtacgtacaagccggaacgcgacggcctcttttgcgagcgcattttcggtccg
gtcaaagactacgaatgccattgcggcaagtacaagcgtatccgctacaaaggcatcgtc
tgcgaccgttgcggcgtggaagtgaccgagaagaaggtgcgccgcgaacgtatggggcac
atttcgctggtcgttccggtagcgcatatctggtatttccgttcgctgccctcgaaaatc
ggctacctgttggggatcccgaccaagaaactcgaagcgatcatttactacgaacgttac
gtagtggttcagccgggagccgccgctgtgaacggcgtggccgaactcgacctgctggca
gagaaagagtacctcgatatcgtcaatgctttgcccaaaggcaaccaacagctcgacgac
tccgacccggacaagttcatcgccatgatgggcgccgaagcgatctacacgctgttgcag
cgcgtggacctcgacgaactctcctattcgctgcgccacaaggccagcacggagacctcg
cagcagcgcaaggccgaagcactcaagcgcctgcacgtcgtggaagcattccgcgaatcg
cgcgaagtgaataaacccgagtggatgatcctcaaggtgatccccgtgatcccgccagaa
ctgcgtcccctcgttccgctggacggcggccgtttcgccacttccgacctgaacgacctg
taccgtcgcgtgattatccgtaacaaccgcctgaaacggttgatcgaaatcaaagcaccg
gatgtcatcctgcgcaacgagaaacgcatgttgcaggaagccgtggattccctgttcgac
aactcgcgcaaaagcaatgccgtgaagacggaatcgaaccgcccgctcaaatcgctttcg
gatagtctgaagggtaaacagggacgtttccgccagaacctgctcggtaaacgtgtcgac
tattcggcccgttcggtaatcgtcgtcggccccgagctgaagatgcacgagatgggtatt
ccgaaagacatggcagccgagctgtacaagcctttcgtcattcgcaagctgatcgaacgc
ggtattgtcaagaccgttaaatcggccaagaagattatcgaccgcaaagacccggtgatc
tgggatatcctcgagaacgtgatcaaaggccacccggtgctgatgaaccgtgcaccgacc
ctgcaccggctcggtatccaggctttccagcccaaactgatcgagggcaaggccctgcaa
ttgcacccgctggcttgtaccgccttcaacgccgacttcgacggcgaccagatggccgtg
cacctgccgctgggcaatgcagccattttggaggcccagttgctgatgctcggttcgcac
aacatcctgaacccggccaacggcgcgccgatcacggtgccgtcgcaggacatggtactc
ggtctgtattatatcaccaaagagcgtgctggttcgaaaggcgaaggactcgctttctac
ggacccgaagaagcgatcatcgcctataacgaaaaccgtgcaggcctgcatgccaaagtg
aaggtgatggccgacacgctcgacgagaacgaccagccggtcaagaaactgatcgatacc
acgatcggacgtatcctgttcaatcaggtggtccccaaagaggtgggatacctcaacgag
gtattgaccaaacgttcactgcgcgacatcatcgcactggtgatgaagaaagccggtgcc
gacaaggctgccgagttcctcgacgcgatcaagaacctcggttatcaaatggctttcaag
ggcggcttgtcgttcaacctcgacgcggtcatcatccccgaagagaaagacaagctggta
caggagggctacgaacgcgtggacgaggtgatggagagctacaacatgggtcttatcacc
aacaacgagcgttacaaccagatcatcgatatctggaccaatatcaacatgaagctgacc
aagacggtgctcgaccacctcacctcggacatgcagggtttcaatccggtctatatgatg
ttggactcgggagcccgtggttcgaaagagcagattcgccagctttccggtatgcgcggc
ctgatggccaaaccgcagaaatcgggagcagaaggcggtcaggtcatcgaaaacccgatc
ctttcgaacttcaaagagggtttgtcggtactggagtacttcatctcgacgcacggtgcc
cgtaaaggtctggccgataccgcactgaagacggccgacgccggttacctgacgcgtcgt
ctggtcgacgtagcgcaggacgtgatcatcagcgaagaggattgcggcacgctccgcggc
ctgacggctacggccatcaagcgcaatgaagacgtggtgcaaaccctctacgaacgcatt
atcggacgtaccaccgtgcacgacgtgcacaacccgcacacgggcgaactgatcgtcgct
gccggagaagagatcaccgaaaatatcgctgcggctatcgatgccgccggtatcgaatcg
gtcgatatccgttcggtattgacctgcgaatcccgcaagggcgtctgtgcgaagtgctac
ggccgcaacctggctaccgcacgcatggtacagaaaggcgaagtggtcggcgtaatcgcc
gcgcagtccatcggcgagccgggtacccagctgacgctgcgtaccttccacgtcggtggt
gtcgccggaggtgtggcaaccgacaacagtgtcgtttcccgctacgaaggccgcctcgag
atcgacgatctgcgcaccgtcaagagcaagaacgaagcaggcaaagaggtcaatatggtc
atcagccgcctcgcggagatgcgcatcgtcgatgtcaacaccgacatcgtactctatacg
cacaacctgcaatacggctcgacactctatatgaacgacggcgacctggtgaaaaagggc
gacctgatctgcgaatgggatccgtacaatgcggttatcatctcggaatacgacggtaag
atcgccttcgagaacgtcatcgagaacgtcacctaccgcgacgagttcgacgaacagacg
ggcttccgtgaaaaggtgatcatcgagtcgaaagacaagacgaagaacccggtcatcaag
attctcgacaagaaaggcgacgagcagaagcaatacaacctgcctgtcggcgctcacatc
gtcgtgaaagaggatgctacgatcaaagcaggcgaaatcctgatcaagatcccgcgcgcc
atcggtaaggcgggtgatatcaccggcggtctgccgcgtgttaccgagctcttcgaggcc
cgtaacccgtcgaatcccgccatcgtatctgaaatcgacggtgagatttcgttcggaaag
atcaagcggggcaaccgcgaaatcgtcgttacctcgaaaatgggcgacgtgaagcgttac
ctcgtaccgctgtctcgtcagatcctcgtgcaggagaacgactatgtccgtgccggtacg
ccgctttcggacggagcgatcactccgggcgatattctggccatccagggcccgactaag
gtccaggagtacatcgtcaacgaggtacaggaggtataccgcatgcagggtgtgaagatc
aacgacaagcacttcgaggtgatcgtgcgccagatgatgaacaaggtacagatcgacgat
ccgggcgatacccgtttcctgcccgagcagatcgtcgacaagtgggagttcatggaggtc
aacgacgaactgtacgacaaggtcgtcgtgaccgatccgggcgagtcgcctacgatgcgc
gccgggatgatcatcaccgtgcgcaaattgcgtgacgagaactctgtactcaaacgcaaa
gaccagaaactggtcgaggtacgcgacgtcatccctgccacctcgaaccagatcctgcag
ggtattacccgtgcggcactgcaaaccagcagcttcatgtcggcagcatcgttccaggag
acgaccaaagtgctgaacgaagcggccatactcggcaagagcgacccgctcgagaagctg
aaagagaacgtaatctgcggccacctgattccggccggtacgggcgaaccgaagtaccaa
agcattctcgtcgggtcgatggacgattacaattcaatggtaggtacacagtcgcaggaa
tag
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integrated database retrieval system
